This bug affects me too.  I posted about this on the ubuntu forums many
months ago and got a "linux memory use is different from what you are
used to" except that linux is really all I'm used to.

If I examine 'free', 'top', 'htop', system monitor, '/proc/meminfo',
etc, they all say that I'm using about 2 GB (NOT including buffers or
cache, with those it tops 3.3 GB).  However, when I print 'ps aux' to a
file and add up all the memory listed in there it only comes to 950 MB.
So where has the rest gone?

I am running a fresh (within 24 hrs), up-to-date Karmic official release
install and this really bums me out!  I was hoping that the problem
would vanish when I up graded to 9.10.  I had the same issue in Jaunty.

I have attached the output of 'cat /proc/meminfo', 'free -t' and 'ps
aux'.  I imported the ps_aux data into OOCalc and added up all the
process memory and it came to 25% or 993 MB.  Free shows nearly 2 GB in
use (3.3 GB with buffers).

Karmic 64 bit
Lenovo T400
4 GB RAM
ATI Discreet graphics with fglrx driver (note: when I had this problem in 9.04, 
I was using integrated intel graphics)

** Attachment added: "mem_info.tar"
   http://launchpadlibrarian.net/34853191/mem_info.tar

-- 
Unknown/unaccounted memory leak
https://bugs.launchpad.net/bugs/432531
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