Hmm so what happened is that you used desktop-swicher and that changed
the GConf settings from "use the defaults" (Gtk+ theme and panel layout
notably) to "user set".  On upgrade, the defaults were changed but your
"manually" set settings were kept as overrides.

(This is typically why we drop desktop-switcher and want to use separate
session types which override the GConf path in next release.)

I guess we need some piece of code on upgrades which forces fixing the
panel config, the gtk+ theme and the like when we detect that you one
used desktop-switcher.

-- 
indicator session applet missing after upgrade to Karmic with UNR
https://bugs.launchpad.net/bugs/461115
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