I cannot reproduce your problem.
Please do _not_ run eclipse as root for installing plugins. It will get
in conflict with the package manager. You can install plugins as user
instead.
Can you please purge eclipse and remove the files installed by running
eclipse as root (e.g. /usr/lib/eclipse should be empty). Install eclipse
again. Rename or remove ~/.eclipse. Test eclipse, install your plugins
(as user), and test again.
** Changed in: eclipse (Ubuntu)
Status: New => Incomplete
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GDK_NATIVE_WINDOWS=1 still required for some dialogs
https://bugs.launchpad.net/bugs/458703
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