ii  libvirt-bin          0.6.1-0ubuntu5.1     the programs for the libvirt 
library
ii  libvirt0             0.6.1-0ubuntu5.1     library for interfacing with 
different virtualization sy

I can confirm the same problem happens to me.
Unchecking disk IO and network IO statistics in preferences suppress the 
messages in syslog.

** Changed in: virt-manager (Ubuntu)
       Status: New => Confirmed

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Turning on Disk I/O or Network I/O in prefs will syslog "invalid domain pointer 
in no domain with matching id -1" repeatedly
https://bugs.launchpad.net/bugs/416184
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