"Is there some way to force this module to be unloaded and reloaded on
suspend/resume?"

Yes, there is.
Add "ath9k" to the following line in /etc/default/acpi-support
MODULES=""

so it looks like this:
MODULES="ath9k"

If that doesn't work, you can try adding also the dependencies of this module, 
namely:
mac80211 cfg80211

or these, if you have linux-backports-modules installed:
lbm_cw_mac80211 lbm_cw_cfg80211

-- 
ath9k not working on resume
https://bugs.launchpad.net/bugs/441475
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