Some good news. In part,  at least.

ASUS M2N-VN-DH mobo, Ubuntu Jaunty (9.04) AMD64.

This syste, had been unusable. If I enabled AHCI the system would lock
up on the grub loading message. This meant I had to tune down to IDE
mode. SATA transfers were awful and general file transfers to USB where
even worse.

I'm pleased to report that after the latest kernel updates -
2.6.28-15-generic #52-Ubuntu SMP Wed Sep 9 10:48:52 UTC 2009 x86_64
GNU/Linux" the system now boots with AHCI enabled and xfer speeds are
right up there where we'd expect them to be. Importantly high xfer rates
are maintained on extended large file transfers. All in all, it's a
relief.

Unfortunately the problem persists on another system with an ASUS M3A
mobo when running Ubuntu Jaunty (9.04) AMD64m kernel 2.6.28-15. No
problem with Fedora, however.

-- 
Slow SATA performance
https://bugs.launchpad.net/bugs/119730
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