I don't think this is a problem with ubuntu, but a limitation with the
FAT32 filesystem, since it's a case insensitive filesystem.

Sources:
http://en.wikipedia.org/wiki/Comparison_of_file_systems
http://en.wikipedia.org/wiki/Case-sensitive

That page also lists that FAT32 is a partial case preserving filesystem,
so it isn't a fully case preserving file system.

I can confirm that this behaviour occurs on 9.04.

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Can't use all uppercase names for folders and files on fat32 drives
https://bugs.launchpad.net/bugs/440517
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