Got the same type of error but it seems it's not limited to update manager.
firefox, gnome-terminal, ...
Also I've no way to save any settings change any more.

running a Karmic alpha5 install updated twice a day

uname -a
Linux computer 2.6.31-11-generic #38-Ubuntu SMP Fri Oct 2 11:06:40 UTC 2009 
x86_64 GNU/Linux


/usr/lib/libgconf2-4/gconf-sanity-check-2; echo $?
0

ps -efH | grep gconfd
user   4077  2489  0 19:48 pts/0    00:00:00       grep gconfd
user   2736     1  0 19:08 ?        00:00:00   /usr/lib/libgconf2-4/gconfd-2

-- 
update-manager crashed with GError in restore_state()
https://bugs.launchpad.net/bugs/261471
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