I had this too updating today. I assume Kovács is updating from xorg-
edgers.

I can solve the issue by downgrading the mesa libs to the earlier
packages on the repository.

Running the following packages I don't have missing non subpixel smoothing 
fonts:
libgl1-mesa-dri 7.6.0+git20090908.e589a37f-0ubuntu0tormod~jaunty
libgl1-mesa-glx 7.6.0+git20090908.e589a37f-0ubuntu0tormod~jaunty
libglu1-mesa 7.6.0+git20090908.e589a37f-0ubuntu0tormod~jaunty

Using version of those packages 7.7.0~git20090910.18882f4d-
0ubuntu0tormod~jaunty I have missing fonts.

I tried revert the xserver intel driver and the issue still occurred so
I'd assume it is caused by the mesa libs.

Does any of this information help?

-- 
X fonts disappeared after update
https://bugs.launchpad.net/bugs/427744
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