No, comments are not allowed in the apt preferences file.

I will change this to a wishlist bug against apt to allow this.

** Changed in: update-manager (Ubuntu)
Sourcepackagename: update-manager => apt
   Importance: Undecided => Wishlist
       Status: Unconfirmed => Confirmed

** Summary changed:

- [apport] update-manager crashed with SystemError in open()
+ apt preferences file should allow comments (#) (was: [apport] update-manager 
crashed with SystemError in open())

-- 
apt preferences file should allow comments (#) (was: [apport] update-manager 
crashed with SystemError in open())
https://launchpad.net/bugs/83337

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