Closing as Fixed, the problem indeed is related to the debian report.
>From your term.log: "Preparing to replace nepenthes 0.1.7-1 (using
.../nepenthes_0.1.7-3_amd64.deb) ... .deb) ... Stopping nepenthes:
invoke-rc.d: initscript nepenthes, action "stop" failed."
** Changed in: nepenthes (Ubuntu)
Importance: Undecided => Low
** Changed in: nepenthes (Ubuntu)
Status: New => Fix Released
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upgrade from 6 to 7.04 fails - "subprocess new pre-removal script returned
error exit status 1"
https://bugs.launchpad.net/bugs/127907
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