I notice the problem was related to multiple factor including the
metacity compositing, the bad video driver, some flaw in xorg, etc. I
manage to fix most of the performance issue by a regression to metacity
2.24 (from hardy) and using the Karmic kernel.

Sine I upgrade to Karmic now, this problem doesn't bother me any more.

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[jaunty] cpu scheduling is not optimized for multitask
https://bugs.launchpad.net/bugs/363663
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