I also had this bug after upgrading to 9.04, and 
  sudo apt-get install tracker-utils
  tracker-processes -r # --hard-reset
solved the problem. However, it occured again after I accidentally pulled the 
plug of my computer. I now uninstalled tracker. As savebart, I also have a ntfs 
drive, but it's mounted with an UUID.

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Tracker index corruption (was Tracker does not stop indexing)
https://bugs.launchpad.net/bugs/346912
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