I've done some investigation with the sourcecode.
There's an endless loop in server/MaraDNS.c from which you can exit only with 
and exit() or a couple of break instructions.
I'v added some extra mlog() calls to identify the exiting point, recompiled the 
package and substituted to the official binary.
At the reboot I've got the usual syslog messages and maradns failed to start. 
If I'm right, maradns died sonn after process initialisation.
Maybe this is a real bug in the application but somehow was not happening in 
Ubuntu 8.10 (same maradns version number!) .

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maradns init script silently fails during the boot, but works when run manually
https://bugs.launchpad.net/bugs/370932
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