wb_guy,

I believe there that main use of the notification area is to keep
"minimized applications" that may allow some kind of interaction without
opening a full blown window: a media player that allows you to skip the
current music or pause, network manager that allow you to turn off the
network, bring up an interface or change the wi-fi spot, and so on. In
this sense the name "notification area" is not really good.  In your
reasoning you forgot this use of the application area, and in my current
system all applications I have there allow me to take such simple
actions directly from the embed icons.

However notifications are not something that you want interact with.
They are just something that you should be aware of. However, some
notifications are necessarily transient (the screen brightness was
changed to save energy, or the network is up). They can be shown using
the new, and beautiful, notification bubbles. Other notifications may be
queued to dispatch further action (such as reading emails, reading RSS
feeds, or updating the system). In this case the action is simple: open
the full blown application. For emails, open the MUA window, for RSS
feeds open liferea (or you preferred feed reader), for IM messages open
the chat application, for upgrades open update-manager. You should keep
such notifications somewhere, in this case I believe the right place is
the indicator-applet, that allow you to see them and quickly open the
right application.

I do believe that the icon for the indicator-applet should change from
the envelope to something more neutral (like the i letter in the
official icon). It would also be nice to have different icons for
different cases (for example no notification in the queue, some
notifications in the queue, and urgent notifications - like system
upgrades - in the queue).

-- 
[Jaunty] Update Notifier icon would provide useful status information
https://bugs.launchpad.net/bugs/332945
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