For gdm the shell environment variables is sourced in
/etc/X11/gdm/Xsession. From this script .profile is sourced in Ubuntu.
Other distros often sources other shell spesific profile files like
.bash_profile. I proposed a solution to this in bug #69700.

-- 
.bash_profile is not sources when X session starts
https://launchpad.net/bugs/66004

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