Ran into the same problem. Following jonaz__ solution, with the
exception that I killed the trackerd and tracker-indexer processes,
deleted the contents of ~/.cache/tracker and ~/.local/share/tracker/data
then logged out, and logged back in. Tracker indexer posted a
notification that it was starting up.

Suspect that the tracker from 8.10 and the version of tracker from 9.04
are using some of the same files, but may be using them slightly
differently. Alternatively an error under 8.10 may have been silently
ignored that is generating the dialog under the 9.04 rc code. Possibly
debugging is still enabled? I have not looked at the code though, so I
don't know if that is the right area to point at.

One 'fix' would be to have the installer discard the contents of those
files as history, under the assumption that the new release will
generate a new/clean index. I would suggest that a validation on the
data happen though as I had different results on another machine. My
primary desktop had no problem with the update. It's my laptop which
encountered the issue.

-- 
Corrupted tracker index causes persistent applet error popup
https://bugs.launchpad.net/bugs/361560
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