It is caused by compiz, when you disable it you won't have this issue anymore. 
It seems not to be limited to firefox or opera.
In my case I have also this issue with rythmbox. 
I don't have it under gedit or openoffice.

I have this issue on my samsung NC10 and also on a desktop computer with
an NVIDIA 7300GS graphic card.

Hope it helps

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Firefox blinks when fullscreen and drawing a new object (menu, tooltip, etc.)
https://bugs.launchpad.net/bugs/298470
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