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Testing mysqldump on hardy shows that /etc/mysql/my.cnf is opened and
read:

math...@t-mysql-h:~$ strace mysqldump 2>&1 | grep 'my.cnf'
stat("/etc/mysql/my.cnf", {st_mode=S_IFREG|0644, st_size=3926, ...}) = 0
open("/etc/mysql/my.cnf", O_RDONLY)     = 3
stat("/home/mathiaz/.my.cnf", 0x7fff0d7f0fc0) = -1 ENOENT (No such file or 
directory)
stat("/usr/etc/my.cnf", 0x7fff0d7f0fc0) = -1 ENOENT (No such file or directory)

Setting options under mysqldump section in /etc/mysql/my.cnf is also
working correctly.

Could you outline what doesn't work for you?

** Changed in: mysql-dfsg-5.0 (Ubuntu)
   Importance: Undecided => Low
       Status: New => Incomplete

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mysqldump doesn't pick up /etc/mysql/my.cnf
https://bugs.launchpad.net/bugs/342578
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