I did not intentionally change those elements, but I am noticing that
the fonts come up sharper in the 'fixed' version. It took some time to
discover why the files could not be opened / were crashing other pdf
editors. Initially, I copy and pasted working elements from pdfs that
were opening correctly and replacing the parts that came up seemingly
"damaged" when I opened them with Open Office (Sun pdf importer
extension) Until I found I could not replicate the blue logo at the
bottom with the same color. By some luck / guessing I right clicked in
an area where there should have been an element and a new context menu
item came up that said "close object". When I did that, the seemingly
missing object reappeared. I went through the rest of the case studies
and applied the same change and then exported them. Open Office imports
pdf to svg/odg, so that translation may have had an effect. From your
example, the color range appears improved and the fonts appear sharper.
I had not intended on that change, but I hope it is an improvement,
albeit an unintentional one on my part.

When I did the copy/paste, I adjusted the elements using the exact
coordinates from the properties given by the "damaged" ones. I checked
to ensure that the elements rendered exactly the same way after
exporting the files, so there my methodology for correcting those issues
did change, but at the time I saw no noticeable effect.

One issue as mentioned in some of the other bug reports, it is obvious
that these files were created with the proprietary Adobe Acrobat. It is
a known issue that Adobe Acrobat, while producing files that render
correctly, they do not follow the published specification as implemented
in open source alternatives. This is why a pdf file created in Adobe
Acrobat can crash software such as Inkscape and pdfedit. In my humble
opinion, the slight unintentional changes that bring the document to
compliance with the open source specification are reasonable, and the
benefits ideal. There was a certain irony to the difficulty in fixing
these problems.

Would people generally agree? Were there any other unintentional changes
I may have over looked? Given that I have spent the better part of two
days getting up to speed with this whole bug / patching issue, I would
really like to get it perfect.

-- 
2 Typos in case_Wellcome.pdf
https://bugs.launchpad.net/bugs/342362
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