Newly updated official kernel, error still persists:

[  347.060057] ata2: EH pending after 5 tries, giving up
[  347.060065] ata2: EH complete
[  347.736035] ata2: EH complete
[  349.624043] ata2: EH complete
[  350.700042] ata2: EH complete
[  351.936042] ata2: EH complete

d...@shuttle:~$ uname -a
Linux shuttle 2.6.28-9-generic #29-Ubuntu SMP Sun Mar 8 02:03:17 UTC 2009 i686 
GNU/Linux

d...@shuttle:~$ apt-cache policy linux-generic
linux-generic:
  Installed: 2.6.28.9.9
  Candidate: 2.6.28.9.9
  Version table:
 *** 2.6.28.9.9 0
        500 http://archive.ubuntu.com jaunty/restricted Packages
        100 /var/lib/dpkg/status

Seems like Andy's fix didn't get into this update.

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Worrying message " ata4: EH pending after 5 tries, giving up" from dmesg
https://bugs.launchpad.net/bugs/269652
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