I've tried with Jaunty alpha 5, once with its default kernel and then tried 
each of the additional 2 kernels that you specified and it's the same.
HDD -> Flash is always significantly slower(23-24s vs 15-16s in Windows)
Flash -> HDD is almost unaffected(5-6s vs 6s in Windows)

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[Jaunty] Slow transfer rate writing to automounted usb drives
https://bugs.launchpad.net/bugs/337830
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