I have same problem. I noticed this problem with notification-daemon and notify-osd (Screenshot-notify-osd_bad.png and Screenshot-notification_daemon.png). But if I removed and reloaded notify-osd daemon the notifications will assume correct position (Screenshot-notify-osd_good.png). With notification-daemon it is ever in bad position.
I attach the screen-shots My Ubuntu version: Description: Ubuntu jaunty a4 (32bit) Release: 9.04 ** Attachment added: "Screenshot-notification_daemon.png" http://launchpadlibrarian.net/22999511/Screenshot-notification_daemon.png -- Pop-up notifications hide Gnome panel https://bugs.launchpad.net/bugs/323873 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs