On 11/20/2017 06:24 AM, Steven D'Aprano wrote:
On Mon, Nov 20, 2017 at 10:26:50AM +0000, Alan Gauld via Tutor wrote:
Actually, pasting code etc is safer since the server removes
attachments. And while it is supposed to preserve plain text
attachments it will throw them away if it sees *anything*
that it thinks looks like binary.
Let's do a test and see what happens! Attached is a .py file in UTF-8.
If that passes through, I think we're good :-)
Also some readers are on
corporate accounts that strip all attachments regardless
of type
Given the popularity of HTML email, corporate logos attached as images,
and the ubiquity of emailing PDF and DOC/DOCX files in the business
world, I would be stunned to come across any corporation that stripped
all attachements.
_______________________________________________
Tutor maillist - Tutor@python.org
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Many thanks. Indeed it worked!
I'm not really looking for someone to do the programming for me. I know
that the code works, because it did and produced the attached plot. I
just don't know why it stopped working. Actually, all of my programming
experience has been with FORTRAN, starting with II in 1961 (yes, I am
rather an old... an Organic Chemist.
Let's start over,
This is the code:
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Multiple_Plots_2_b.py
Copyright (c) 2017 Stephen P. Molnar, Ph.D. All rights reserved.
"""
import numpy as np
from mpl_toolkits.axes_grid1 import host_subplot
import mpl_toolkits.axisartist as AA
import matplotlib.pyplot as plt
data = []
name = input("Enter Molecule ID: ")
name_in = name+'_poutput'
data = np.genfromtxt(name_in)
s = data[:,0]
FTm = data[:,1] #atomic number
FTe = data[:,2] #atomic mass
FTc = data[:,3] #atom electron density
fig = plt.figure(figsize=(7.6,4))
host = host_subplot(111, axes_class=AA.Axes)
plt.subplots_adjust(right=0.75)
par1 = host.twinx()
par2 = host.twinx()
offset = 60
new_fixed_axis = par2.get_grid_helper().new_fixed_axis
par2.axis["right"] = new_fixed_axis(loc="right", axes=par2,
offset=(offset, 0))
par2.axis["right"].toggle(all=True)
host.set_xlim(0, 30)
"""
host.set_ylim(min(FTm), max(FTm))
"""
host.set_xlabel("Distance ($\AA$)")
host.set_ylabel("Atomic Number")
par1.set_ylabel("Atom Mass")
par2.set_ylabel("Atom Electron Density")
p1, = host.plot(data[:,0], data[:,1])#, label="Atomic Number")
p2, = par1.plot(data[:,0], data[:,2])#, label="Atom Mass")
p3, = par2.plot(data[:,0], data[:,3])#, label="Atom Electron Density")
"""
par1.set_ylim(min(FTe), max(FTe))
par2.set_ylim(min(FTc),max(FTc))
"""
#host.legend()
host.axis["left"].label.set_color(p1.get_color())
par1.axis["right"].label.set_color(p2.get_color())
par2.axis["right"].label.set_color(p3.get_color())
host.title.set_text('Molecule {0} - Molecular Transforms'.format(name))
plt.draw()
plt.show()
name_plt = name+'-fig1.png'
fig.savefig(name_plt,bbox_inches='tight')
And the input file A_poutput:
0.150000 1457.204006 998.233839 -0.018612
0.300000 1344.817934 931.699910 -0.017571
0.450000 1170.330414 827.700509 -0.015915
0.600000 951.240195 695.702122 -0.013757
0.750000 708.832611 547.341272 -0.011238
0.900000 465.526861 395.074189 -0.008520
1.050000 242.168335 250.776922 -0.005770
1.200000 55.640011 124.478386 -0.003147
1.350000 -82.889238 23.385404 -0.000790
1.500000 -168.863907 -48.686568 0.001192
1.650000 -204.304928 -91.423531 0.002725
1.800000 -196.892849 -107.676083 0.003774
1.950000 -158.353900 -102.749215 0.004342
2.100000 -102.425393 -83.440486 0.004465
2.250000 -42.724395 -56.976574 0.004210
2.400000 9.160768 -30.003148 0.003659
2.550000 45.090063 -7.765044 0.002907
2.700000 61.128133 6.423416 0.002048
2.850000 57.577347 11.367836 0.001171
3.000000 38.344275 7.846857 0.000349
3.150000 9.797326 -1.817135 -0.000359
3.300000 -20.657232 -14.377418 -0.000917
3.450000 -46.025084 -26.358616 -0.001307
3.600000 -60.958617 -34.712347 -0.001528
3.750000 -62.589086 -37.332393 -0.001596
3.900000 -50.849425 -33.359410 -0.001536
4.050000 -28.274206 -23.244463 -0.001380
4.200000 0.647490 -8.581977 -0.001162
4.350000 30.419924 8.240844 -0.000915
4.500000 55.601812 24.504898 -0.000668
4.650000 71.786890 37.644793 -0.000444
4.800000 76.337446 45.676179 -0.000259
4.950000 68.758579 47.497775 -0.000122
5.100000 50.671170 43.026846 -0.000036
5.250000 25.414468 33.157608 0.000001
5.400000 -2.627852 19.562143 -0.000004
5.550000 -28.841964 4.378077 -0.000039
5.700000 -49.186470 -10.157324 -0.000095
5.850000 -60.843330 -22.062653 -0.000159
6.000000 -62.613119 -29.900128 -0.000219
6.150000 -55.002707 -32.954002 -0.000264
6.300000 -40.011347 -31.279440 -0.000284
6.450000 -20.674231 -25.624738 -0.000272
6.600000 -0.461617 -17.250484 -0.000223
6.750000 17.349547 -7.684285 -0.000134
6.900000 30.217978 1.543060 -0.000007
7.050000 36.704572 9.135157 0.000153
7.200000 36.611564 14.205163 0.000340
7.350000 30.887904 16.366163 0.000542
7.500000 21.337500 15.730856 0.000745
7.650000 10.200327 12.830456 0.000931
7.800000 -0.305538 8.475307 0.001083
7.950000 -8.392428 3.587153 0.001184
8.100000 -12.989800 -0.965458 0.001218
8.250000 -13.865349 -4.501286 0.001173
8.400000 -11.571637 -6.611087 0.001043
8.550000 -7.243459 -7.184785 0.000828
8.700000 -2.298165 -6.384063 0.000537
8.850000 1.893836 -4.572551 0.000186
9.000000 4.300063 -2.221752 -0.000202
9.150000 4.422590 0.187190 -0.000598
9.300000 2.366936 2.247742 -0.000969
9.450000 -1.222319 3.685155 -0.001284
9.600000 -5.337564 4.380342 -0.001511
9.750000 -8.852834 4.361341 -0.001629
9.900000 -10.782542 3.769297 -0.001621
10.050000 -10.499667 2.809727 -0.001487
10.200000 -7.869748 1.701068 -0.001234
10.350000 -3.276223 0.631156 -0.000884
10.500000 2.464059 -0.271036 -0.000469
10.650000 8.273897 -0.945429 -0.000028
10.800000 13.038886 -1.394038 0.000399
10.950000 15.833457 -1.662153 0.000770
11.100000 16.103771 -1.814211 0.001050
11.250000 13.771794 -1.911156 0.001215
11.400000 9.242103 -1.994565 0.001252
11.550000 3.313230 -2.080285 0.001163
11.700000 -2.985528 -2.161399 0.000962
11.850000 -8.596642 -2.217844 0.000678
12.000000 -12.634473 -2.228480 0.000348
12.150000 -14.543259 -2.181162 0.000011
12.300000 -14.183265 -2.077415 -0.000293
12.450000 -11.831038 -1.930211 -0.000529
12.600000 -8.097637 -1.755702 -0.000673
12.750000 -3.785170 -1.561765 -0.000713
12.900000 0.286255 -1.337475 -0.000649
13.050000 3.444324 -1.047676 -0.000496
13.200000 5.289172 -0.635686 -0.000280
13.350000 5.752874 -0.035101 -0.000031
13.500000 5.084229 0.810898 0.000214
13.650000 3.765365 1.926706 0.000424
13.800000 2.380864 3.283445 0.000570
13.950000 1.469617 4.786014 0.000637
14.100000 1.392498 6.272847 0.000617
14.250000 2.244816 7.530844 0.000516
14.400000 3.832308 8.324771 0.000351
14.550000 5.715404 8.437061 0.000146
14.700000 7.311696 7.711171 -0.000073
14.850000 8.033953 6.090102 -0.000276
15.000000 7.433384 3.641765 -0.000439
15.150000 5.316604 0.564736 -0.000543
15.300000 1.810210 -2.828748 -0.000580
15.450000 -2.642187 -6.151479 -0.000548
15.600000 -7.351504 -8.996319 -0.000458
15.750000 -11.509884 -10.998722 -0.000323
15.900000 -14.347438 -11.895943 -0.000165
16.050000 -15.287336 -11.572105 -0.000005
16.200000 -14.067416 -10.080444 0.000138
16.350000 -10.802914 -7.637870 0.000248
16.500000 -5.976553 -4.591918 0.000313
16.650000 -0.356722 -1.365240 0.000331
16.800000 5.141053 1.612947 0.000304
16.950000 9.622693 3.976462 0.000240
17.100000 12.381359 5.480370 0.000150
17.250000 13.027990 6.037313 0.000047
17.400000 11.560979 5.725370 -0.000056
17.550000 8.361334 4.766082 -0.000148
17.700000 4.114364 3.476794 -0.000220
17.850000 -0.326569 2.206282 -0.000267
18.000000 -4.107304 1.265785 -0.000287
18.150000 -6.538177 0.868443 -0.000282
18.300000 -7.224883 1.088608 -0.000252
18.450000 -6.139379 1.848705 -0.000204
18.600000 -3.617297 2.936154 -0.000139
18.750000 -0.282930 4.047106 -0.000062
18.900000 3.082729 4.848645 0.000024
19.050000 5.704201 5.047554 0.000114
19.200000 6.971360 4.452410 0.000206
19.350000 6.564880 3.017031 0.000294
19.500000 4.522214 0.856722 0.000374
19.650000 1.230971 -1.766056 0.000438
19.800000 -2.648913 -4.484225 0.000481
19.950000 -6.318611 -6.889144 0.000496
20.100000 -9.002726 -8.602539 0.000477
20.250000 -10.107995 -9.344044 0.000422
20.400000 -9.346550 -8.981821 0.000330
20.550000 -6.798915 -7.556928 0.000205
20.700000 -2.903834 -5.276963 0.000055
20.850000 1.623478 -2.480263 -0.000108
21.000000 5.928860 0.422670 -0.000271
21.150000 9.185629 3.019640 -0.000419
21.300000 10.757201 4.966197 -0.000537
21.450000 10.323870 6.041463 -0.000612
21.600000 7.948619 6.180453 -0.000637
21.750000 4.068745 5.477529 -0.000608
21.900000 -0.585430 4.161075 -0.000530
22.050000 -5.129229 2.544839 -0.000409
22.200000 -8.692916 0.965619 -0.000260
22.350000 -10.588841 -0.280687 -0.000100
22.500000 -10.444054 -0.992625 0.000055
22.650000 -8.272710 -1.096543 0.000188
22.800000 -4.474256 -0.654048 0.000287
22.950000 0.242214 0.157064 0.000342
23.100000 4.992771 1.083970 0.000352
23.250000 8.886579 1.853469 0.000319
23.400000 11.194571 2.229163 0.000253
23.550000 11.486519 2.059953 0.000167
23.700000 9.710378 1.310590 0.000074
23.850000 6.199083 0.068697 -0.000010
24.000000 1.604060 -1.472605 -0.000074
24.150000 -3.231163 -3.052584 -0.000107
24.300000 -7.432407 -4.393498 -0.000107
24.450000 -10.259983 -5.253775 -0.000075
24.600000 -11.245723 -5.473386 -0.000015
24.750000 -10.275890 -5.002726 0.000061
24.900000 -7.604690 -3.909790 0.000143
25.050000 -3.796750 -2.364759 0.000217
25.200000 0.389244 -0.605594 0.000273
25.350000 4.152273 1.108109 0.000301
25.500000 6.805936 2.543593 0.000298
25.650000 7.909843 3.536125 0.000263
25.800000 7.350003 4.014905 0.000199
25.950000 5.353055 4.009026 0.000113
26.100000 2.432371 3.632910 0.000015
26.250000 -0.722508 3.054842 -0.000086
26.400000 -3.390524 2.455632 -0.000178
26.550000 -4.968693 1.986324 -0.000255
26.700000 -5.096709 1.733989 -0.000310
26.850000 -3.731726 1.702825 -0.000341
27.000000 -1.158468 1.814569 -0.000347
27.150000 2.067294 1.928147 -0.000331
27.300000 5.230689 1.874430 -0.000297
27.450000 7.602892 1.498788 -0.000250
27.600000 8.590698 0.702348 -0.000195
27.750000 7.860842 -0.526952 -0.000137
27.900000 5.414273 -2.100526 -0.000078
28.050000 1.595387 -3.836088 -0.000021
28.200000 -2.966087 -5.484824 0.000033
28.350000 -7.469726 -6.774045 0.000083
28.500000 -11.093709 -7.457409 0.000130
28.650000 -13.150129 -7.363012 0.000173
28.800000 -13.216479 -6.429907 0.000210
28.950000 -11.218047 -4.725585 0.000241
29.100000 -7.445355 -2.440554 0.000261
29.250000 -2.503302 0.139537 0.000267
29.400000 2.798296 2.679474 0.000257
29.550000 7.591889 4.849545 0.000229
29.700000 11.109157 6.380035 0.000181
29.850000 12.818104 7.105092 0.000116
30.000000 12.514665 6.987915 0.000037
30.150000 10.352073 6.122683 -0.000048
Incidentally, my email client is FossaMail and I do not send html emails.
--
Stephen P. Molnar, Ph.D. Life is a fuzzy set
www.molecular-modeling.net Stochastic and multivariate
(614)312-7528 (c)
Skype: smolnar1
runfile('/home/comp/Apps/Python/Plot_T_Data/MultiplePlots_3.py',
wdir='/home/comp/Apps/Python/Plot_T_Data')
Enter Molecule ID: A
Traceback (most recent call last):
File "<ipython-input-22-d74ad7d779d0>", line 1, in <module>
runfile('/home/comp/Apps/Python/Plot_T_Data/MultiplePlots_3.py',
wdir='/home/comp/Apps/Python/Plot_T_Data')
File
"/usr/local/lib/python3.5/dist-packages/spyder/utils/site/sitecustomize.py",
line 688, in runfile
execfile(filename, namespace)
File
"/usr/local/lib/python3.5/dist-packages/spyder/utils/site/sitecustomize.py",
line 101, in execfile
exec(compile(f.read(), filename, 'exec'), namespace)
File "/home/comp/Apps/Python/Plot_T_Data/MultiplePlots_3.py", line 67, in
<module>
plt.draw()
File "/usr/local/lib/python3.5/dist-packages/matplotlib/pyplot.py", line 691,
in draw
get_current_fig_manager().canvas.draw_idle()
File "/usr/local/lib/python3.5/dist-packages/matplotlib/backend_bases.py",
line 2053, in draw_idle
self.draw(*args, **kwargs)
File
"/usr/local/lib/python3.5/dist-packages/matplotlib/backends/backend_agg.py",
line 430, in draw
self.figure.draw(self.renderer)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/artist.py", line 55,
in draw_wrapper
return draw(artist, renderer, *args, **kwargs)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/figure.py", line
1295, in draw
renderer, self, artists, self.suppressComposite)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/image.py", line 138,
in _draw_list_compositing_images
a.draw(renderer)
File
"/usr/lib/python3/dist-packages/mpl_toolkits/axes_grid1/parasite_axes.py", line
295, in draw
self._get_base_axes_attr("draw")(self, renderer)
File "/usr/lib/python3/dist-packages/mpl_toolkits/axisartist/axislines.py",
line 778, in draw
super(Axes, self).draw(renderer, inframe)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/artist.py", line 55,
in draw_wrapper
return draw(artist, renderer, *args, **kwargs)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/axes/_base.py", line
2399, in draw
mimage._draw_list_compositing_images(renderer, self, artists)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/image.py", line 138,
in _draw_list_compositing_images
a.draw(renderer)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/artist.py", line 55,
in draw_wrapper
return draw(artist, renderer, *args, **kwargs)
File "/usr/lib/python3/dist-packages/mpl_toolkits/axisartist/axis_artist.py",
line 1572, in draw
self._draw_line(renderer)
File "/usr/lib/python3/dist-packages/mpl_toolkits/axisartist/axis_artist.py",
line 1170, in _draw_line
self.line.draw(renderer)
File "/usr/lib/python3/dist-packages/mpl_toolkits/axisartist/axis_artist.py",
line 163, in draw
lineFunc = getattr(self, funcname)
AttributeError: 'BezierPath' object has no attribute '_draw_solid'
Traceback (most recent call last):
File
"/home/comp/.local/lib/python3.5/site-packages/IPython/core/formatters.py",
line 332, in __call__
return printer(obj)
File
"/home/comp/.local/lib/python3.5/site-packages/IPython/core/pylabtools.py",
line 237, in <lambda>
png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png',
**kwargs))
File
"/home/comp/.local/lib/python3.5/site-packages/IPython/core/pylabtools.py",
line 121, in print_figure
fig.canvas.print_figure(bytes_io, **kw)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/backend_bases.py",
line 2208, in print_figure
**kwargs)
File
"/usr/local/lib/python3.5/dist-packages/matplotlib/backends/backend_agg.py",
line 507, in print_png
FigureCanvasAgg.draw(self)
File
"/usr/local/lib/python3.5/dist-packages/matplotlib/backends/backend_agg.py",
line 430, in draw
self.figure.draw(self.renderer)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/artist.py", line 55,
in draw_wrapper
return draw(artist, renderer, *args, **kwargs)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/figure.py", line
1295, in draw
renderer, self, artists, self.suppressComposite)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/image.py", line 138,
in _draw_list_compositing_images
a.draw(renderer)
File
"/usr/lib/python3/dist-packages/mpl_toolkits/axes_grid1/parasite_axes.py", line
295, in draw
self._get_base_axes_attr("draw")(self, renderer)
File "/usr/lib/python3/dist-packages/mpl_toolkits/axisartist/axislines.py",
line 778, in draw
super(Axes, self).draw(renderer, inframe)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/artist.py", line 55,
in draw_wrapper
return draw(artist, renderer, *args, **kwargs)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/axes/_base.py", line
2399, in draw
mimage._draw_list_compositing_images(renderer, self, artists)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/image.py", line 138,
in _draw_list_compositing_images
a.draw(renderer)
File "/usr/local/lib/python3.5/dist-packages/matplotlib/artist.py", line 55,
in draw_wrapper
return draw(artist, renderer, *args, **kwargs)
File "/usr/lib/python3/dist-packages/mpl_toolkits/axisartist/axis_artist.py",
line 1572, in draw
self._draw_line(renderer)
File "/usr/lib/python3/dist-packages/mpl_toolkits/axisartist/axis_artist.py",
line 1170, in _draw_line
self.line.draw(renderer)
File "/usr/lib/python3/dist-packages/mpl_toolkits/axisartist/axis_artist.py",
line 163, in draw
lineFunc = getattr(self, funcname)
AttributeError: 'BezierPath' object has no attribute '_draw_solid'
<matplotlib.figure.Figure at 0x7f92fc3f8be0>
0.150000 1457.204006 998.233839 -0.018612
0.300000 1344.817934 931.699910 -0.017571
0.450000 1170.330414 827.700509 -0.015915
0.600000 951.240195 695.702122 -0.013757
0.750000 708.832611 547.341272 -0.011238
0.900000 465.526861 395.074189 -0.008520
1.050000 242.168335 250.776922 -0.005770
1.200000 55.640011 124.478386 -0.003147
1.350000 -82.889238 23.385404 -0.000790
1.500000 -168.863907 -48.686568 0.001192
1.650000 -204.304928 -91.423531 0.002725
1.800000 -196.892849 -107.676083 0.003774
1.950000 -158.353900 -102.749215 0.004342
2.100000 -102.425393 -83.440486 0.004465
2.250000 -42.724395 -56.976574 0.004210
2.400000 9.160768 -30.003148 0.003659
2.550000 45.090063 -7.765044 0.002907
2.700000 61.128133 6.423416 0.002048
2.850000 57.577347 11.367836 0.001171
3.000000 38.344275 7.846857 0.000349
3.150000 9.797326 -1.817135 -0.000359
3.300000 -20.657232 -14.377418 -0.000917
3.450000 -46.025084 -26.358616 -0.001307
3.600000 -60.958617 -34.712347 -0.001528
3.750000 -62.589086 -37.332393 -0.001596
3.900000 -50.849425 -33.359410 -0.001536
4.050000 -28.274206 -23.244463 -0.001380
4.200000 0.647490 -8.581977 -0.001162
4.350000 30.419924 8.240844 -0.000915
4.500000 55.601812 24.504898 -0.000668
4.650000 71.786890 37.644793 -0.000444
4.800000 76.337446 45.676179 -0.000259
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