Hello all,
I have a csv file (from a previous code output). It looks like this:
Species2, Protein ID, E_value, Length, Hit From, Hit to, Protein ID2, Locus
Tag, Start/Stop, Species
Streptomyces sp. AA4, ZP_05482482, 2.8293600000000001e-140, 5256, 1824,
2249\n, ZP_05482482, StAA4_0101000304844,
complement(NZ_ACEV01000078.1:25146..40916)4, Streptomyces sp. AA4: 0\n
Streptomyces sp. AA4, ZP_05482482, 8.0333299999999997e-138, 5256, 123,
547\n, ZP_05482482, StAA4_0101000304844,
complement(NZ_ACEV01000078.1:25146..40916)4, Streptomyces sp. AA4: 0\n
Streptomyces sp. AA4, ZP_05482482, 1.08889e-124, 5256, 3539, 3956\n,
ZP_05482482, StAA4_0101000304844,
complement(NZ_ACEV01000078.1:25146..40916)4, Streptomyces sp. AA4: 0\n
....
I want to removing certain sections in each line so I wrote this code using
csv.DictWriter:
import csv
data = csv.DictReader(open('strep_aa.txt'))
for x in data:
del x['Species2']
del x[' Protein ID2']
print x
When it prints to the screen everything works great:
{' Hit From': ' 1824', ' Hit to': ' 2249\\n', ' Protein ID': '
ZP_05482482', ' Locus Tag': ' StAA4_0101000304844', ' Start/Stop': '
complement(NZ_ACEV01000078.1:25146..40916)4', ' Species': ' Streptomyces
sp. AA4: 0\\n', ' Length': ' 5256', ' E_value': '
2.8293600000000001e-140'}
{' Hit From': ' 123', ' Hit to': ' 547\\n', ' Protein ID': '
ZP_05482482', ' Locus Tag': ' StAA4_0101000304844', ' Start/Stop': '
complement(NZ_ACEV01000078.1:25146..40916)4', ' Species': ' Streptomyces
sp. AA4: 0\\n', ' Length': ' 5256', ' E_value': '
8.0333299999999997e-138'}
What I don't know how to do is the export this back out a csv file and
rearrange each key as a column header so it work look like this:
Species Protein ID E Value .....
I thought csv.DictWriter would be the way to go since it writes dictionaries
to text files. I was wondering how do I go about doing this? I don't really
understand the syntax.
Thank you!
Ara
--
Quis hic locus, quae regio, quae mundi plaga. Ubi sum. Sub ortu solis an sub
cardine glacialis ursae.
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