** Changed in: python3-defaults (Ubuntu)
Status: New => Invalid
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https://bugs.launchpad.net/bugs/2002660
Title:
networkx incompatible with numpy 1.24
Status in networkx package in Ubuntu:
Fix Released
Status in nipype package in Ubuntu:
Invalid
Status in python3-defaults package in Ubuntu:
Invalid
Bug description:
The nipype autopkgtests have started failing with the following stack
trace:
____________ ERROR collecting pipeline/plugins/tests/test_tools.py
_____________
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1050: in _gcd_import
???
<frozen importlib._bootstrap>:1027: in _find_and_load
???
<frozen importlib._bootstrap>:992: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1050: in _gcd_import
???
<frozen importlib._bootstrap>:1027: in _find_and_load
???
<frozen importlib._bootstrap>:992: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1050: in _gcd_import
???
<frozen importlib._bootstrap>:1027: in _find_and_load
???
<frozen importlib._bootstrap>:1006: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:688: in _load_unlocked
???
<frozen importlib._bootstrap_external>:883: in exec_module
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
nipype/pipeline/plugins/__init__.py:5: in <module>
from .debug import DebugPlugin
nipype/pipeline/plugins/debug.py:7: in <module>
import networkx as nx
/usr/lib/python3/dist-packages/networkx/__init__.py:115: in <module>
import networkx.readwrite
/usr/lib/python3/dist-packages/networkx/readwrite/__init__.py:15: in <module>
from networkx.readwrite.graphml import *
/usr/lib/python3/dist-packages/networkx/readwrite/graphml.py:314: in <module>
class GraphML(object):
/usr/lib/python3/dist-packages/networkx/readwrite/graphml.py:346: in GraphML
(np.int, "int"), (np.int8, "int"),
/usr/lib/python3/dist-packages/numpy/__init__.py:284: in __getattr__
raise AttributeError("module {!r} has no attribute "
E AttributeError: module 'numpy' has no attribute 'int'
The problematic code is in the networkx package, and seems to have
been fixed in
https://github.com/networkx/networkx/commit/207147ee179554a33f10f25032054d3e01f96188
(which is in 2.5 onwards).
Debian currently ships with 2.8.8, we might want to merge?
This is currently blocking the python3-defaults transition.
To manage notifications about this bug go to:
https://bugs.launchpad.net/ubuntu/+source/networkx/+bug/2002660/+subscriptions
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