After updating to the latest version of TSVN, my internal TLS CA stopped 
being recognized both in TSVN and bundled commandline svn.
I am presented with this:

Error validating server certificate for '####hostname####':
 - The certificate is not issued by a trusted authority. Use the
   fingerprint to validate the certificate manually!

It looks like it cannot see the CA in the windows trusted root CA 
certificate list anymore!
It is still there, and it works fine for example in Internet Explorer.
It was working fine before.

How can i fix/debug this?

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