looking at the STAX processes/threads I see two constantly doing
something like:
futex(0x2aaacc943f60, FUTEX_WAKE, 1) = 0
socket(PF_FILE, SOCK_STREAM, 0) = 15
fcntl(15, F_GETFD) = 0
fcntl(15, F_SETFD, FD_CLOEXEC) = 0
fcntl(15, F_GETFL) = 0x2 (flags O_RDWR)
fcntl(15, F_SETFL, O_RDWR|O_NONBLOCK) = 0
connect(15, {sa_family=AF_FILE, path="/tmp/STAFIPC_STAF"}, 110) = 0
fcntl(15, F_GETFL) = 0x802 (flags O_RDWR|O_NONBLOCK)
fcntl(15, F_SETFL, O_RDWR) = 0
sendto(15, "\0\0\0\0\2\0\0\0", 8, 0, NULL, 0) = 8
recvfrom(15, "\0\0\0\0", 4, MSG_NOSIGNAL, NULL, NULL) = 4
sendto(15,
"\0\0\0\0\5\n\0\0d\351\0\0\5\0\0\0\5\0\0\0\10\0\0\0localQUE"..., 42,
0, NULL, 0) = 42
recvfrom(15, "\5\0\0\0", 4, MSG_NOSIGNAL, NULL, NULL) = 4
recvfrom(15, ">\0\0\0", 4, MSG_NOSIGNAL, NULL, NULL) = 4
recvfrom(15, "HandleManager::updateTimestamp()"..., 62, MSG_NOSIGNAL,
NULL, NULL
) = 62
close(15)
I think this is the "QUEUE GET traffic you described in your last email.
however, I don't see any jobs when I STAX LIST JOBS on this machine,
so where are are these coming from?
Nathan Parrish wrote:
> Hi Sharon,
>
> Back to this problem again... CPU load on our STAX machine is sitting
> around 3, and has been well above 1 since early February. What's
> interesting to note this time is that we apparently restarted STAX for
> some other reason on February 17, and yet load was plateaued just south
> of 2 from February 3-ish. It then increased to the current peak of ~3
> midway through the first week of March. This suggests to me that while
> STAX may be contributing, there seems to be some component of this
> problem involving STAF itself.
>
> In fact, I'm beginning to think there are several discrete issues which
> are combining to push the CPU load up to where it begins to cause
> problems. Possibly, one or more of these issues are related to the
> network problems I mentioned earlier this month on the STAF/STAX forums;
> that is, I wonder if there might be some areas where some STAF or STAX
> threads get into a bad (CPU-eating) state if they miss a packet or 4.
>
> Presently I've managed to eliminate all long-running STAX jobs, and yet
> I'm still seeing significant spew from my strace -fp on STAFProc. It
> seems there are several pattens of the forked processes (of which there
> are 300), and I'd like your help understanding what might be happening
> with each.
>
> Thread Behavior Pattern #1 (pid 2516; which is only 2 greater than
> STAFProc pid 2514, so I'm guessing this is a listener thread?):
> fcntl(16, F_GETFD) = 0
> fcntl(16, F_SETFD, FD_CLOEXEC) = 0
> futex(0x2aaab005c504, FUTEX_CMP_REQUEUE, 1, 2147483647, 0x2aaab005c4d8,
> 0) = 1
> futex(0x2aaab005c4d8, FUTEX_WAKE, 1) = 1
> accept(8, {sa_family=AF_FILE, pa...@}, [12300248949435924482]) = 14
> fcntl(14, F_GETFD) = 0
> fcntl(14, F_SETFD, FD_CLOEXEC) = 0
> futex(0x2aaab005c504, FUTEX_CMP_REQUEUE, 1, 2147483647, 0x2aaab005c4d8,
> 0) = 1
> futex(0x2aaab005c4d8, FUTEX_WAKE, 1) = 1
> accept(8, {sa_family=AF_FILE, pa...@}, [12300248949435924482]) = 16
> fcntl(16, F_GETFD) = 0
> fcntl(16, F_SETFD, FD_CLOEXEC) = 0
> futex(0x2aaab005c504, FUTEX_CMP_REQUEUE, 1, 2147483647, 0x2aaab005c4d8,
> 0) = 1
> futex(0x2aaab005c4d8, FUTEX_WAKE, 1) = 1
> accept(8, {sa_family=AF_FILE, pa...@}, [12300248949435924482]) = 14
> fcntl(14, F_GETFD) = 0
> fcntl(14, F_SETFD, FD_CLOEXEC) = 0
> futex(0x2aaab005c504, FUTEX_CMP_REQUEUE, 1, 2147483647, 0x2aaab005c4d8,
> 0) = 1
>
> Thread Behavior Pattern #2 (pid 4228):
> futex(0x2aab9c000020, FUTEX_WAIT, 2, NULL) = -1 EAGAIN (Resource
> temporarily unavailable)
> futex(0x2aab9c000020, FUTEX_WAKE, 1) = 0
> close(17) = 0
> futex(0x89ffa4, FUTEX_WAIT, 589133383, NULL) = 0
> futex(0x89ff78, FUTEX_WAKE, 1) = 0
> select(10, [9], NULL, NULL, {120, 0}) = 1 (in [9], left {120, 0})
> recvfrom(9, "\0\0\0\0\2\0\0\0", 8, MSG_NOSIGNAL, NULL, NULL) = 8
> select(10, NULL, [9], NULL, {120, 0}) = 1 (out [9], left {120, 0})
> sendto(9, "\0\0\0\0", 4, 0, NULL, 0) = 4
> select(10, [9], NULL, NULL, {120, 0}) = 1 (in [9], left {120, 0})
> recvfrom(9, "\0\0\0\0\5\n\0\0\345\r\0\0\5\0\0\0\5\0\0\0\10\0\0\0", 24,
> MSG_NOSIGNAL, NULL, NULL) = 24
> select(10, [9], NULL, NULL, {120, 0}) = 1 (in [9], left {120, 0})
> recvfrom(9, "localQUEUEGET WAIT", 18, MSG_NOSIGNAL, NULL, NULL) = 18
> select(10, NULL, [9], NULL, {120, 0}) = 1 (out [9], left {120, 0})
> sendto(9, "\5\0\0\0", 4, 0, NULL, 0) = 4
> select(10, NULL, [9], NULL, {120, 0}) = 1 (out [9], left {120, 0})
> sendto(9, "=\0\0\0", 4, 0, NULL, 0) = 4
> select(10, NULL, [9], NULL, {120, 0}) = 1 (out [9], left {120, 0})
> sendto(9, "HandleManager::updateTimestamp()"..., 61, 0, NULL, 0) = 61
> close(9) = 0
> futex(0x89ffa4, FUTEX_WAIT, 589133385, NULL) = 0
> futex(0x89ff78, FUTEX_WAKE, 1) = 0
> select(18, [17], NULL, NULL, {120, 0}) = 1 (in [17], left {120, 0})
> recvfrom(17, "\0\0\0\0\2\0\0\0", 8, MSG_NOSIGNAL, NULL, NULL) = 8
> select(18, NULL, [17], NULL, {120, 0}) = 1 (out [17], left {120, 0})
> sendto(17, "\0\0\0\0", 4, 0, NULL, 0) = 4
> select(18, [17], NULL, NULL, {120, 0}) = 1 (in [17], left {120, 0})
> recvfrom(17, "\0\0\0\0\5\n\0\0\345\r\0\0\5\0\0\0\5\0\0\0\10\0\0\0", 24,
> MSG_NOSIGNAL, NULL, NULL) = 24
> select(18, [17], NULL, NULL, {120, 0}) = 1 (in [17], left {120, 0})
> recvfrom(17, "localQUEUEGET WAIT", 18, MSG_NOSIGNAL, NULL, NULL) = 18
> select(18, NULL, [17], NULL, {120, 0}) = 1 (out [17], left {120, 0})
> sendto(17, "\5\0\0\0", 4, 0, NULL, 0) = 4
> select(18, NULL, [17], NULL, {120, 0}) = 1 (out [17], left {120, 0})
> sendto(17, "=\0\0\0", 4, 0, NULL, 0) = 4
> select(18, NULL, [17], NULL, {120, 0}) = 1 (out [17], left {120, 0})
> sendto(17, "HandleManager::updateTimestamp()"..., 61, 0, NULL, 0) = 61
> close(17)
> futex(0x322814c960, FUTEX_WAKE, 1) = 0
> futex(0x89ffa4, FUTEX_WAIT, 589133389, NULL
> [sits here quietly for some time]
>
> Thread Behavior Pattern #3 (pid 14664):
> recvfrom(16, "get system var testenvs/snowball"..., 62, MSG_NOSIGNAL,
> NULL, NULL) = 62
> select(17, [16], NULL, NULL, {120, 0}) = 1 (in [16], left {120, 0})
> recvfrom(16, "\4\0\0\0", 4, MSG_NOSIGNAL, NULL, NULL) = 4
> select(17, [16], NULL, NULL, {120, 0}) = 1 (in [16], left {120, 0})
> recvfrom(16, "none", 4, MSG_NOSIGNAL, NULL, NULL) = 4
> select(17, [16], NULL, NULL, {120, 0}) = 1 (in [16], left {120, 0})
> recvfrom(16, "\t\0\0\0", 4, MSG_NOSIGNAL, NULL, NULL) = 4
> select(17, [16], NULL, NULL, {120, 0}) = 1 (in [16], left {120, 0})
> recvfrom(16, "anonymous", 9, MSG_NOSIGNAL, NULL, NULL) = 9
> select(17, [16], NULL, NULL, {120, 0}) = 1 (in [16], left {120, 0})
> recvfrom(16, "\0\0\0\0", 4, MSG_NOSIGNAL, NULL, NULL) = 4
> select(17, [16], NULL, NULL, {120, 0}) = 1 (in [16], left {120, 0})
> recvfrom(16, "\33\0\0\0", 4, MSG_NOSIGNAL, NULL, NULL) = 4
> select(17, [16], NULL, NULL, {120, 0}) = 1 (in [16], left {120, 0})
> recvfrom(16, "devnode4.colo.sproutsys.com", 27, MSG_NOSIGNAL, NULL,
> NULL) = 27
> this appears to be the VAR service, which we use extensively. it wakes
> up and does something every few seconds, which seems quite reasonable.
>
>
>
> What it seems like, from this distance, is that one of many PIDs will be
> acting like #2, in what appears to be 'competition' with #1 (from a very
> naive/cargo cult perspective; on further thought this is an I/O thread,
> right?). If I strace specifically the the #2-type PID, it will appear
> to be mostly idle. This could be some sort of strace anomaly, or more
> likely my misapprehension of the threading behavior of STAF. But I'm
> led back to my working theory that some or many STAFProc threads are off
> the ranch somewhere, causing this CPU churn. Beyond stracing these
> threads/procs, what can I do to determine what these threads are or why
> they are in this state?
>
> Hmm, gdb perhaps?
> ok, so my theory about 2516 seems to be validated with:
> 301 Thread 1081932112 (LWP 2516) 0x0000003228a0ce2b in accept ()
> from /lib64/libpthread.so.0
> 300 Thread 1086028112 (LWP 2517) 0x0000003228a0ce2b in accept ()
> from /lib64/libpthread.so.0
>
> everything else is in:
> 2 Thread 46913072695632 (LWP 28913) 0x0000003228a0a486 in
> pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0
>
> except for:
> 302 Thread 1077836112 (LWP 2515) 0x0000003228a0a677 in
> pthread_cond_timedwait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0
>
> I don't feel terribly enlightened by this, unfortunately. Other
> suggestions?
>
> Thanks again,
> Nathan
>
> Sharon Lucas wrote:
>> Ok, then that shows that the high CPU usage was related to STAX.
>>
>> The strace output you provided shows lots of "GET WAIT" requests
>> submitted to the QUEUE service on the local STAX machine. Each STAX job
>> has a STAFQueueMonitor class that in a loop continuously checks for
>> messages on the STAX job handle's queue (e.g. STAF command completion
>> messages and process completion messages) by submitting a QUEUE GET WAIT
>> request. If there are no messages, the QUEUE GET WAIT request waits
>> indefinitely for a message to appear on its queue (and this doesn't use
>> up CPU). But, in your case, one or more STAX jobs were constantly
>> getting messages on its queue and processing them.
>>
>> In STAF V3.3.3, we added support for getting multiple messages off a
>> handle's queue by adding the ALL and FIRST options to the QUEUE
>> service's GET/PEEK requests as getting multiple messages off a queue can
>> improve performance (over getting a single message at a time off a queue
>> multiple times). So, I'll look into changing STAX to do a QUEUE GET ALL
>> WAIT request and when I get this done, I could send an updated STAX.jar
>> file to you and perhaps you could try it out to see if it improves
>> performance and decreases CPU utilization.
>>
>> But, if you have some "abusive" STAX jobs that do CPU intensive things
>> like in a loop then those STAX jobs should be fixed. For example, if in
>> a STAX job someone uses a <loop> element to constantly submit a STAF
>> service request (like a PING request) via a <stafcmd>, there should also
>> be a delay in the loop between STAF service requests so that it isn't
>> using up all the CPU. Anyone can write a STAX job that eats up all the
>> CPU, just like anyone can write a program in any language that eats up
>> all the CPU.
>>
>> --------------------------------------------------------------
>> Sharon Lucas
>> IBM Austin, luc...@us.ibm.com
>> (512) 286-7313 or Tieline 363-7313
>>
>>
>>
>> *Nathan Parrish <nparr...@clustrix.com>*
>>
>> 11/03/2009 07:39 PM
>>
>>
>> To
>> Sharon Lucas/Austin/i...@ibmus
>> cc
>> staf-users@lists.sourceforge.net
>> Subject
>> Re: [staf-users] high CPU utilization by STAFProc and STAX JVM
>>
>>
>>
>>
>>
>>
>>
>>
>> after removing/adding the STAX service (and taking the opportunity to
>> switch to a newer JVM), the CPU load has dropped.
>>
>> before the service restart, strace did show STAFProc as being awfully
>> busy, compared to what I see now. now I see it stopping every second or
>> so, whereas before it spewed at a rate of 5-20 lines a second. here is
>> a sampling of output, not that I expect it will be particularly
>> revealing: http://pastebin.com/m769fe708
>>
>> thanks again for your help in digging into this matter; perhaps the
>> newer JVM will have fixed the issue, though I suspect it's our tendency
>> towards abusive stax jobs, and we'll see this crop up again.
>>
>> nathan
>>
>> ----- "Sharon Lucas" <luc...@us.ibm.com> wrote:
>>
>> > Right. STAF does not currently ever "reap" threads. If at one time 270
>> > threads were created, then that's how many threads will remain
>> > created. We have considered adding the ability to reap threads, but
>> > that has not been implemented.
>> >
>> > However, this should not effect CPU usage. But it does effect memory
>> > usage, as when a thread is created, a default thread stack of a size
>> > dependent on the operating system is created. On Linux machines, STAF
>> > overrides the default thread stack size to $M if its > 4M (as it can
>> > be 8M or 10M) in STAF V3.2.3 or later. Note that you can further
>> > override it by setting the STAF_THREAD_STACK_SIZE environment variable
>> > before starting STAFProc. For example, setting
>> > STAF_THREAD_STACK_SIZE=4194304 specifies 4M as the value specified is
>> > the thread stack size in kilobytes.
>> >
>> > --------------------------------------------------------------
>> > Sharon Lucas
>> > IBM Austin, luc...@us.ibm.com
>> > (512) 286-7313 or Tieline 363-7313
>> >
>> >
>> >
>> > Nathan Parrish <nparr...@clustrix.com>
>> >
>> > 11/03/2009 03:29 PM
>> > To Sharon Lucas/Austin/i...@ibmus
>> >
>> > cc staf-users@lists.sourceforge.net
>> >
>> > Subject Re: [staf-users] high CPU utilization by
>> STAFProc and STAX
>> > JVM
>> >
>> >
>> >
>> >
>> > right, I understand this. my question is how 'thread growth' works.
>> > presumably the delta controls some behavior regarding how many new
>> > threads we spin off when the system detects that we are running
>> > low/out of threads.
>> > also, are threads ever reaped? or if my system was incredibly busy at
>> > some time in the past, such that 270 threads were really all going at
>> > once, will I have all those threads sitting around even if they are no
>> > longer unneeded? is it possible that the overhead of this many idle
>> > threads could be causing my CPU churn?
>> >
>> > thanks,
>> > nathan
>> >
>> > ----- "Sharon Lucas" <luc...@us.ibm.com> wrote:
>> >
>> > > No, the STAF MISC service simply shows the initial threads and the
>> > > thread growth delta. It doesn't show the number of threads that STAF
>> > > has created.
>> > >
>> > > --------------------------------------------------------------
>> > > Sharon Lucas
>> > > IBM Austin, luc...@us.ibm.com
>> > > (512) 286-7313 or Tieline 363-7313
>> > >
>> > >
>> > >
>> > > Nathan Parrish <nparr...@clustrix.com>
>> > >
>> > > 11/03/2009 02:43 PM
>> > > To Sharon Lucas/Austin/i...@ibmus
>> > >
>> > > cc staf-users@lists.sourceforge.net
>> > >
>> > > Subject Re: [staf-users] high CPU utilization by STAFProc and STAX
>> > > JVM
>> > >
>> > >
>> > >
>> > >
>> > > Our longevity test has finally finished, so I'm able to poke around
>> > a
>> > > bit deeper, and can look at doing things like restarting the STAX
>> > > service, or STAFProc itself later this afternoon.
>> > >
>> > > I enabled tracing, and I see traffic on the order of maybe 5-20
>> > > queries a second, mostly the VAR service (90+% gets), and some
>> > > semaphore requests as well. I'll get breaks in traffic as long as 3
>> > > seconds...
>> > >
>> > > short of doing gdb, I tried strace -fp on the process, and noticed
>> > > that it was quite busy, and was also dealing with a very large
>> > number
>> > > of child processes. I believe linux does some weird stuff mixing
>> > what
>> > > constitutes a process vs. a thread; I don't see all these process
>> > with
>> > > ps, but pstree -p does show them, something like ~270 (not counting
>> > > the java procs/threads which are also underneath the main STAFProc
>> > > PID). looking on another machine (which is not running STAX, or
>> > > servicing tons of variable requests, etc.), it has 82. my desktop,
>> > > which does run STAX for testing purposes, looks to have 90.
>> > >
>> > > from misc settings:
>> > > Initial Threads : 10
>> > > Thread Growth Delta : 1
>> > >
>> > > does this suggest that some threads have gotten spun off into
>> > > never-never land and other threads have been created as a result?
>> > >
>> > >
>> > >
>> > > ----- "Sharon Lucas" <luc...@us.ibm.com> wrote:
>> > > > Unfortunately, I didn't really get many clues as to why STAFProc
>> > is
>> > > > using up so much CPU from the information you provided. Does the
>> > CPU
>> > > > usage for STAFProc constantly stay very high (e.g. above 100%)?
>> > > >
>> > > > What are your STAX jobs doing? Can you give a description of some
>> > of
>> > > > the STAF service requests that they are submitting.
>> > > >
>> > > > Since STAFProc was started 21 days ago on your STAX service
>> > machine,
>> > > > 1,832,518,328 STAF service requests have been submitted to this
>> > > > machine. That's a lot of STAF service requests. Do you have any
>> > > > "rogue" STAX jobs that are constantly submitting STAF service
>> > > requests
>> > > > in a loop (without a good reason)? What STAF service requests are
>> > > > being submitted the most?
>> > > >
>> > > > Yes, you can enable STAF tracing to see if that gives any clues
>> > > about
>> > > > what's driving the CPU load (though note that enabling STAF
>> > tracing
>> > > > may slow things down a little). To see what STAF service requests
>> > > are
>> > > > being submitted and when each STAF service request completes, you
>> > > > could enable trace points ServiceRequest, ServiceComplete, and
>> > > > RemoteRequests. Note that this will generate tons of trace output
>> > > > since lots of STAF service requests are being submitted to this
>> > > > machine, so you'll also want to redirect STAFProc's trace output
>> > to
>> > > a
>> > > > file in a location where there is lots of available disk space and
>> > > > monitor the size of this file. You may also want to enable the
>> > > Warning
>> > > > tracepoint so that any warning messages are also logged.For
>> > example:
>> > > >
>> > > > STAF staxMachine TRACE SET DESTINATION TO FILE
>> > > > /usr/local/staf/STAFProc.trc
>> > > > STAF staxMachine TRACE ENABLE TRACEPOINTS "ServiceRequest
>> > > > ServiceComplete RemoteRequests Warning"
>> > > >
>> > > > See section "8.18 Trace Service" in the STAF User's Guide for more
>> > > > information.
>> > > >
>> > > > I don't know if the trace output will help us in determining why
>> > > > STAFProc is using up so much CPU. Maybe there is some thread in
>> > > > STAFProc that is in a bad state and constantly looping for some
>> > > > unknown reason (like the STAFProcessMonitor thread that monitors
>> > for
>> > > > processes to complete). The only way I know of to check this would
>> > > be
>> > > > if STAFProc was started via a debugger like gdb. Then, once it got
>> > > in
>> > > > this "bad" state of high CPU usage, you could break in via gdb and
>> > > > list threads (info threads) and change to each thread (thread n)
>> > and
>> > > > check the backtraces (bt) for each thread to see what they are
>> > > doing.
>> > > > For example:
>> > > >
>> > > > Use gdb to debug STAF locally as follows:
>> > > > 1. gdb STAFProc
>> > > > 2. run
>> > > > 3. Recreate the problem.
>> > > >
>> > > > Various commands that you might need while using gdb are:
>> > > >
>> > > > • help
>> > > > • help tracepoints
>> > > > • help stack
>> > > > • info threads
>> > > > • thread n
>> > > > • bt
>> > > >
>> > > > Of course, this will require that STAF be shut down and then
>> > > restarted
>> > > > using gdb so you may not be able to do that now while your long
>> > runs
>> > > > are still running.
>> > > >
>> > > > There's no reason that I know of not to use a 1.6.0 JVM with the
>> > > STAX
>> > > > service so you can try that instead of upgrading to a more recent
>> > > > 1.5.0 JVM.
>> > > >
>> > > > You may want to increase the STAX service's MaxFileCacheSize from
>> > 20
>> > > > to something like 50. This won't "fix" the problem of STAFProc
>> > using
>> > > > 100%+ CPU, but whenever a STAX job is executed, it first needs to
>> > be
>> > > > XML parsed and this is a very CPU-intensive process (so if the CPU
>> > > > usage is already high, it will take longer for STAX to parse a
>> > STAX
>> > > > job before execution of the STAX job begins). So, if you are
>> > running
>> > > > the same STAX job file more than one, the first time STAX needs to
>> > > > parse it, but then it will cache it so that if the exact same STAX
>> > > job
>> > > > is submitted to be executed again, it doesn't have to be re-parsed
>> > > (if
>> > > > it's still in the STAX file cache). So, that's why I recommended
>> > > > increasing the STAX service's MaxFileCacheSize. It can be
>> > increased
>> > > > dynamically as follows:
>> > > >
>> > > > STAF staxMachine STAX SET MAXFILECACHESIZE 50
>> > > >
>> > > > Note that this setting only applies to this instance of the STAX
>> > > > service. If you shutdown and restarted STAFProc, it would no
>> > longer
>> > > > apply. You would want to add this setting when registering the
>> > STAX
>> > > > service in your STAF.cfg file to make it "permanent".
>> > > >
>> > > > You may also want to increase the maximum heap size for the STAX
>> > JVM
>> > > > from 384m to something like 512m by specifying OPTION J2=-Xmx512m
>> > > > (instead of OPTION J2=-Xmx384m).
>> > > >
>> > > > SERVICE STAX LIBRARY JSTAF EXECUTE
>> > > > /usr/local/staf/services/stax/STAX.jar \
>> > > > OPTION JVM=/usr/java/jdk1.6.0_16/bin/java OPTION JVMName=STAX \
>> > > > OPTION J2=-Xmx384m PARMS "MAXFILECACHESIZE 50"
>> > > >
>> > > > --------------------------------------------------------------
>> > > > Sharon Lucas
>> > > > IBM Austin, luc...@us.ibm.com
>> > > > (512) 286-7313 or Tieline 363-7313
>>
>
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