The warning is emitted by Sphinx. So preamble.tex code is not related
with the problem. It is caused by only reST notation.

Thanks,
Takeshi KOMIYA

2017-05-11 21:35 GMT+09:00 Barbara Pilbin <[email protected]>:
> Thank you so much for trying.  It seems like it works for lots of other
> people.  It makes me wonder if I have something in my preamble.tex or
> config.py doing something I don't know or understand.  I will work on trying
> to make something small and shareable.  (When I get something together, I
> will submit to the isssues.)
>
> I truly appreciate your time!
> Barbara
>
> On Thursday, May 11, 2017 at 1:45:30 AM UTC-5, Komiya Takeshi wrote:
>>
>> Hi Barbara,
>>
>> I'd tried to reproduce your problem, but I could not. on my local, it
>> is able to refer the figures.
>> Could you share your project or provide minimal reproducible one?
>> If possible, it would be nice if you file this into our issues list.
>> https://github.com/sphinx-doc/sphinx/issues
>>
>> Thanks,
>>
>> 2017-05-06 4:41 GMT+09:00 Barbara Pilbin <[email protected]>:
>> > Hi,
>> >
>> > I have spent quite a bit of time searching and trying to figure out what
>> > I
>> > am doing wrong. If anyone happens to see what I have missed, I would
>> > appreciate the guidance.
>> >
>> > Here are the relevant pieces from my conf.py file:
>> >
>> > # -- Options for automatic Figure numbering
>> > numfig = True
>> > numfig_secnum_depth = (2)
>> >
>> > # Add any Sphinx extension module names here, as strings. They can be
>> > # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
>> > # ones.
>> > extensions = ['sphinx.ext.intersphinx',
>> >     'sphinx.ext.todo',
>> >     'sphinx.ext.ifconfig',
>> >     'sphinx.ext.githubpages',
>> >     #'rst2pdf.pdfbuilder'
>> >     ]
>> >
>> >
>> > latex_engine = 'xelatex'
>> >
>> > -----------------------------------------
>> >
>> > I have a topic file that is trying to reference a figure as follows:
>> >
>> > ----------
>> > The window displays ( :ref:`fig-authentication` ).
>> > The window displays ( :numref:`Figure %s <fig-authentication>` is my
>> > caption
>> > ).
>> >
>> > .. _fig-authentication:
>> >
>> > .. figure:: /_static/access/authentication.jpg
>> >    :align: center
>> >
>> >    Authentication Window
>> >
>> > -----------
>> >
>> > The first sentence outputs the caption of the figure.
>> > The second sentence gives me an error that says:
>> > WARNING: no number is assigned for figure: fig-authentication
>> >
>> > In the PDF output, the figures do have numbers assigned to them.
>> >
>> > I would appreciate any direction that you can provide.
>> >
>> > Thanks,
>> > barbara
>> >
>> > --
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