I'm encountering the same problem (and "solution" of downgrading).  The 
version that works for me is graphviz @2.28.0_9

I can't seem to find a changelog showing what changed in graphviz from 2.28 
to 2.30, but something seems to have broken the sphinx inheritance 
diagram... I'll add an issue.

On Monday, March 4, 2013 8:29:50 AM UTC-5, Mario wrote:
>
> At least I could find out, what was causing the problem, though it still 
> does not make sense. It was an upgrade of graphviz to
> graphviz @2.30.1_0+pangocairo+x11
>
> A simple downgrade solved my problem. At least temporarily.
>

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