Can I feed sa-learn ONE file that contains a large number of emails?
It should work if it's in mbox format and you tell sa-learn to use that format. The alternative is to use a tool to split it out into many files in a single directory and use the directory mode. See man sa-learn for command-line options including these:
-f file, --folders=file Read list of files/directories from file
--dir Learn a directory of RFC 822 files
--file Learn a file in RFC 822 format
--mbox Learn a file in mbox format
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