I would check that you have MariaDB-shared installed too on the host you
build on prior to your build. The changed the way the packaging is done
in MariaDB and Slurm needs to detect the files in MariaDB-shared to
actually trigger the configure to build the mysql libs.
-Paul Edmon-
On 12/3/2021 7:40 PM, Giuseppe G. A. Celano wrote:
10.4.22
On Sat, Dec 4, 2021 at 1:35 AM Brian Andrus <toomuc...@gmail.com> wrote:
Which version of Mariadb are you using?
Brian Andrus
On 12/3/2021 4:20 PM, Giuseppe G. A. Celano wrote:
After installation of libmariadb-dev, I have reinstalled the
entire slurm with ./configure + options, make, and make install.
Still, accounting_storage_mysql.so is missing.
On Sat, Dec 4, 2021 at 12:24 AM Sean Crosby
<scro...@unimelb.edu.au> wrote:
Did you run
./configure (with any other options you normally use)
make
make install
on your DBD server after you installed the mariadb-devel package?
------------------------------------------------------------------------
*From:* slurm-users <slurm-users-boun...@lists.schedmd.com>
on behalf of Giuseppe G. A. Celano <giuseppegacel...@gmail.com>
*Sent:* Saturday, 4 December 2021 10:07
*To:* Slurm User Community List <slurm-users@lists.schedmd.com>
*Subject:* [EXT] Re: [slurm-users] slurmdbd does not work
*
*External email: *Please exercise caution
*
------------------------------------------------------------------------
The problem is the lack of
/usr/lib/slurm/accounting_storage_mysql.so
I have installed many mariadb-related packages, but that file
is not created by slurm after installation: is there a point
in the documentation where the installation procedure for the
database is made explicit?
On Fri, Dec 3, 2021 at 5:15 PM Brian Andrus
<toomuc...@gmail.com> wrote:
You will need to also reinstall/restart slurmdbd with the
updated binary.
Look in the slurmdbd logs to see what is happening there.
I suspect it had errors updating/creating the database
and tables. If you have no data in it yet, you can just
DROP the database and restart slurmdbd.
Brian Andrus
On 12/3/2021 6:42 AM, Giuseppe G. A. Celano wrote:
Thanks for the answer, Brian. I now added
--with-mysql_config=/etc/mysql/my.cnf, but the problem
is still there and now also slurmctld does not work,
with the error:
[2021-12-03T15:36:41.018] accounting_storage/slurmdbd:
clusteracct_storage_p_register_ctld: Registering
slurmctld at port 6817 with slurmdbd
[2021-12-03T15:36:41.019] error: _conn_readable:
persistent connection for fd 9 experienced error[104]:
Connection reset by peer
[2021-12-03T15:36:41.019] error:
_slurm_persist_recv_msg: only read 150 of 2613 bytes
[2021-12-03T15:36:41.019] error: Sending PersistInit
msg: No error
[2021-12-03T15:36:41.020] error: _conn_readable:
persistent connection for fd 9 experienced error[104]:
Connection reset by peer
[2021-12-03T15:36:41.020] error:
_slurm_persist_recv_msg: only read 150 of 2613 bytes
[2021-12-03T15:36:41.020] error: Sending PersistInit
msg: No error
[2021-12-03T15:36:41.020] error: _conn_readable:
persistent connection for fd 9 experienced error[104]:
Connection reset by peer
[2021-12-03T15:36:41.020] error:
_slurm_persist_recv_msg: only read 150 of 2613 bytes
[2021-12-03T15:36:41.020] error: Sending PersistInit
msg: No error
[2021-12-03T15:36:41.020] error: DBD_GET_TRES failure:
No error
[2021-12-03T15:36:41.021] error: _conn_readable:
persistent connection for fd 9 experienced error[104]:
Connection reset by peer
[2021-12-03T15:36:41.021] error:
_slurm_persist_recv_msg: only read 0 of 2613 bytes
[2021-12-03T15:36:41.021] error: Sending PersistInit
msg: No error
[2021-12-03T15:36:41.021] error: DBD_GET_QOS failure: No
error
[2021-12-03T15:36:41.021] error: _conn_readable:
persistent connection for fd 9 experienced error[104]:
Connection reset by peer
[2021-12-03T15:36:41.021] error:
_slurm_persist_recv_msg: only read 150 of 2613 bytes
[2021-12-03T15:36:41.021] error: Sending PersistInit
msg: No error
[2021-12-03T15:36:41.021] error: DBD_GET_USERS failure:
No error
[2021-12-03T15:36:41.022] error: _conn_readable:
persistent connection for fd 9 experienced error[104]:
Connection reset by peer
[2021-12-03T15:36:41.022] error:
_slurm_persist_recv_msg: only read 0 of 2613 bytes
[2021-12-03T15:36:41.022] error: Sending PersistInit
msg: No error
[2021-12-03T15:36:41.022] error: DBD_GET_ASSOCS failure:
No error
[2021-12-03T15:36:41.022] error: _conn_readable:
persistent connection for fd 9 experienced error[104]:
Connection reset by peer
[2021-12-03T15:36:41.022] error:
_slurm_persist_recv_msg: only read 0 of 2613 bytes
[2021-12-03T15:36:41.022] error: Sending PersistInit
msg: No error
[2021-12-03T15:36:41.022] error: DBD_GET_RES failure: No
error
[2021-12-03T15:36:41.022] fatal: You are running with a
database but for some reason we have no TRES from it.
This should only happen if the database is down and you
don't have any state files.
On Thu, Dec 2, 2021 at 10:36 PM Brian Andrus
<toomuc...@gmail.com> wrote:
Your slurm needs built with the support. If you have
mysql-devel installed it should pick it up,
otherwise you can specify the location with
--with-mysql when you configure/build slurm
Brian Andrus
On 12/2/2021 12:40 PM, Giuseppe G. A. Celano wrote:
Hi everyone,
I am having trouble getting /slurmdbd/ to work.
This is the error I get:
/error: Couldn't find the specified plugin name for
accounting_storage/mysql looking at all files
error: cannot find accounting_storage plugin for
accounting_storage/mysql
error: cannot create accounting_storage context for
accounting_storage/mysql
fatal: Unable to initialize
accounting_storage/mysql accounting storage plugin/
I have installed /mysql/ (/apt install mysql/) on
Ubuntu 20.04.03 and followed the instructions on
the slurm website
<https://slurm.schedmd.com/accounting.html>;
/mysql/ is running (/port 3306/) and these are the
relevant parts in my /.conf/ files:
/slurm.conf/
# LOGGING AND ACCOUNTING
AccountingStorageHost=localhost
AccountingStoragePort=3306
AccountingStorageType=accounting_storage/slurmdbd
AccountingStorageUser=slurm
JobCompType=jobcomp/none
JobAcctGatherFrequency=30
JobAcctGatherType=jobacct_gather/linux
SlurmctldDebug=info
SlurmctldLogFile=/var/log/slurmctld.log
SlurmdDebug=info
SlurmdLogFile=/var/log/slurmd.log
/slurmdbd.conf/
AuthType=auth/munge
DbdAddr=localhost
DbdHost=localhost
DbdPort=3306
LogFile=/var/log/slurmdbd.log
PidFile=/var/run/slurmdbd.pid
PluginDir=/usr/lib/slurm
SlurmUser=slurm
StoragePass=password
StorageType=accounting_storage/mysql
StorageUser=slurm
StorageLoc=slurm_acct_db
I changed the port to 3306 because otherwise
/slurmdbd /could not communicate with /mysql/. If I
run /sacct/, for example, I get:
/sacct: error: _slurm_persist_recv_msg: read of fd
3 failed: No error
sacct: error: _slurm_persist_recv_msg: only read
126 of 2616 bytes
sacct: error: slurm_persist_conn_open: No response
to persist_init
sacct: error: Sending PersistInit msg: No error
JobID JobName Partition Account AllocCPUS
State ExitCode
------------ ---------- ---------- ----------
---------- ---------- --------
sacct: error: _slurm_persist_recv_msg: read of fd 3
failed: No error
sacct: error: _slurm_persist_recv_msg: only read
126 of 2616 bytes
sacct: error: Sending PersistInit msg: No error
sacct: error: DBD_GET_JOBS_COND failure:
Unspecified error/
/
/
Does anyone have a suggestion to solve this
problem? Thank you very much.
Best,
Giuseppe
