We have TMPDIR setup inside prolog file. Hope users do not have absolute path
/tmp inside their scripts.
#!/bin/bash
SLURM_BIN="/opt/slurm/bin"
SLURM_job_tmp=/state/partition1/job-${SLURM_JOB_ID}
mkdir -m 700 -p $SLURM_job_tmp
chown $SLURM_JOB_USER $SLURM_job_tmp
echo "export SLURM_JOBTMP=$SLURM_job_tmp"
echo "export SLURM_JOB_TMP=$SLURM_job_tmp"
echo "export SLURM_JOB_TMPDIR=$SLURM_job_tmp"
echo "export TMPDIR=$SLURM_job_tmp”
Best.
Shenglong
> On Nov 21, 2018, at 9:44 AM, Roger Moye <rm...@quantlab.com> wrote:
>
> We are having the exact same problem with $TMPDIR. I wonder if a bug has
> crept in? I spoke to the SchedMD guys at SC18 last week and they were not
> aware of a bug but since more than one person is having this difficulty
> something must be wrong somewhere.
>
> -Roger
>
> From: slurm-users [mailto:slurm-users-boun...@lists.schedmd.com] On Behalf Of
> Douglas Duckworth
> Sent: Wednesday, November 21, 2018 7:38 AM
> To: slurm-users@lists.schedmd.com
> Subject: [slurm-users] $TMPDIR does not honor "TmpFS"
>
> Hi
>
> We are setting TmpFS=/scratchLocal in /etc/slurm/slurm.conf on nodes and
> controller. However $TMPDIR value seems to be /tmp not /scratchLocal. As a
> result users are writing to /tmp which we do not want.
>
> We are not setting $TMPDIR anywhere else such as /etc/profile.d nor do users
> have it defined in their ~/.bashrc or ~/.bash_profile.
>
> We do not see any error messages anywhere which could indicate why the
> default value of /tmp overrides our value of of TmpFS.
>
> As I understand prolog scripts can change this value though, if that's the
> case, then what's the purpose of setting TmpFS in /etc/slurm/slurm.conf?
>
>
> Thanks,
>
> Douglas Duckworth, MSc, LFCS
> HPC System Administrator
> Scientific Computing Unit
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__scu.med.cornell.edu&d=DwMGaQ&c=slrrB7dE8n7gBJbeO0g-IQ&r=gI7YPDDMIksUN29Y65_UCg&m=VfqOl-yXqx9492N0dCQZ7TafygrL8Ev0zem-MEqEYEY&s=H8jTI5dijpEftNyF3D1oZZOBrn4sRgY0wXSxgqUgD2U&e=>
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> 1300 York Avenue
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> E: d...@med.cornell.edu <mailto:d...@med.cornell.edu>
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