Hi, I have upgraded slurm to 15.08 but getting below error. cat slurmdbd.log [2016-09-16T11:47:53.908] Accounting storage MYSQL plugin loaded [2016-09-16T11:47:53.909] Not running as root. Can't drop supplementary groups [2016-09-16T11:47:53.912] slurmdbd version 15.08.12 started [2016-09-16T11:48:04.889] DBD_CLUSTER_TRES: cluster not registered
[root@okdev1315 slurm]# cat slurmctld.log [2016-09-16T11:47:53.835] Not running as root. Can't drop supplementary groups [2016-09-16T11:47:53.835] slurmctld version 15.08.12 started on cluster cluster [2016-09-16T11:47:53.839] error: Association database appears down, reading from state file. [2016-09-16T11:47:53.847] layouts: no layout to initialize [2016-09-16T11:47:53.850] layouts: loading entities/relations information [2016-09-16T11:47:53.850] Recovered state of 5 nodes [2016-09-16T11:47:53.850] Recovered JobID=81205 State=0x1 NodeCnt=0 Assoc=16 [2016-09-16T11:47:53.850] Recovered JobID=81212 State=0x1 NodeCnt=0 Assoc=16 [2016-09-16T11:47:53.850] Recovered information about 2 jobs [2016-09-16T11:47:53.850] cons_res: select_p_node_init [2016-09-16T11:47:53.851] cons_res: preparing for 6 partitions [2016-09-16T11:47:53.851] Recovered state of 0 reservations [2016-09-16T11:47:53.851] read_slurm_conf: backup_controller not specified. [2016-09-16T11:47:53.851] cons_res: select_p_reconfigure [2016-09-16T11:47:53.851] cons_res: select_p_node_init [2016-09-16T11:47:53.851] cons_res: preparing for 6 partitions [2016-09-16T11:47:53.851] Running as primary controller [2016-09-16T11:47:53.851] Registering slurmctld at port 6827 with slurmdbd. [2016-09-16T11:47:53.852] Recovered information about 0 sicp jobs [2016-09-16T11:47:53.936] error: Setting node okdev1314 state to DRAIN [2016-09-16T11:47:53.936] drain_nodes: node okdev1314 state set to DRAIN [2016-09-16T11:47:53.936] error: _slurm_rpc_node_registration node=okdev1314: Invalid argument [2016-09-16T11:47:54.110] error: Setting node okdev1324 state to DRAIN [2016-09-16T11:47:54.110] drain_nodes: node okdev1324 state set to DRAIN [2016-09-16T11:47:54.110] error: _slurm_rpc_node_registration node=okdev1324: Invalid argument [2016-09-16T11:47:54.226] error: Setting node okdev1447 state to DRAIN [2016-09-16T11:47:54.226] drain_nodes: node okdev1447 state set to DRAIN [2016-09-16T11:47:54.226] error: _slurm_rpc_node_registration node=okdev1447: Invalid argument [2016-09-16T11:47:54.373] error: Setting node okdev1367 state to DRAIN [2016-09-16T11:47:54.373] drain_nodes: node okdev1367 state set to DRAIN [2016-09-16T11:47:54.373] error: _slurm_rpc_node_registration node=okdev1367: Invalid argument [2016-09-16T11:47:54.564] error: Setting node okdev1368 state to DRAIN [2016-09-16T11:47:54.564] drain_nodes: node okdev1368 state set to DRAIN [2016-09-16T11:47:54.564] error: _slurm_rpc_node_registration node=okdev1368: Invalid argument [2016-09-16T11:48:40.495] _slurm_rpc_kill_job2: REQUEST_KILL_JOB job 81212 uid 11510 [2016-09-16T11:48:40.495] _slurm_rpc_kill_job2: REQUEST_KILL_JOB job 81205 uid 11510 Any idea what is missing? Thanks & Regards, Balaji Deivam Staff Analyst - Business Data Center Seagate Technology - 389 Disc Drive, Longmont, CO 80503 | 720-684- <720-684-2363>*3395* On Sat, Aug 20, 2016 at 12:10 AM, Barbara Krasovec <[email protected]> wrote: > Check, which are installed: > rpm -qa | grep slurm > > Probably slurm, slurm-munge and slurm-plugins. > > Cheers, > Barbara > > > On 19/08/16 22:54, Balaji Deivam wrote: > > Sorry. Its for compute nodes.. (Not on Control nodes) > > Thanks & Regards, > Balaji Deivam > Staff Analyst - Business Data Center > Seagate Technology - 389 Disc Drive, Longmont, CO 80503 | 720-684- > <720-684-2363>*3395* > > On Fri, Aug 19, 2016 at 2:52 PM, Balaji Deivam <[email protected]> > wrote: > >> Thanks. What are the components have to upgrade in the slurm control >> nodes? >> >> Thanks & Regards, >> Balaji Deivam >> Staff Analyst - Business Data Center >> Seagate Technology - 389 Disc Drive, Longmont, CO 80503 | 720-684- >> <720-684-2363>*3395* >> >> On Thu, Aug 18, 2016 at 2:45 PM, Barbara Krasovec <[email protected]> >> wrote: >> >>> Well, if you're doing the upgrade of already installed packages, you can >>> do: >>> >>> yum update slurm-sql slurm-munge slurm-slurmdbd >>> >>> or >>> >>> rpm -Uvh .... >>> (the U switch is for upgrade of already installed packages) >>> >>> Cheers, >>> Barbara >>> >>> >>> On 18/08/16 19:50, Balaji Deivam wrote: >>> >>> Thanks for your response. >>> >>> I have build the RPMs and got below files generated. Then installed >>> those 3 rpms alone which you have mentioned. Is this right? >>> >>> -rw-r----- 1 root root 25680316 Aug 18 12:44 >>> slurm-15.08.12-1.el6.x86_64.rpm >>> -rw-r----- 1 root root 451160 Aug 18 12:44 >>> slurm-perlapi-15.08.12-1.el6.x86_64.rpm >>> -rw-r----- 1 root root 117380 Aug 18 12:44 >>> slurm-devel-15.08.12-1.el6.x86_64.rpm >>> -rw-r----- 1 root root 16024 Aug 18 12:44 >>> slurm-munge-15.08.12-1.el6.x86_64.rpm >>> -rw-r----- 1 root root 1061536 Aug 18 12:44 >>> slurm-slurmdbd-15.08.12-1.el6.x86_64.rpm >>> -rw-r----- 1 root root 281868 Aug 18 12:44 >>> slurm-sql-15.08.12-1.el6.x86_64.rpm >>> -rw-r----- 1 root root 1140588 Aug 18 12:44 >>> slurm-plugins-15.08.12-1.el6.x86_64.rpm >>> -rw-r----- 1 root root 35760 Aug 18 12:44 >>> slurm-torque-15.08.12-1.el6.x86_64.rpm >>> -rw-r----- 1 root root 7100 Aug 18 12:44 >>> slurm-sjobexit-15.08.12-1.el6.x86_64.rpm >>> -rw-r----- 1 root root 6260 Aug 18 12:44 >>> slurm-slurmdb-direct-15.08.12-1.el6.x86_64.rpm >>> -rw-r----- 1 root root 10420 Aug 18 12:44 >>> slurm-sjstat-15.08.12-1.el6.x86_64.rpm >>> -rw-r----- 1 root root 35696 Aug 18 12:44 >>> slurm-pam_slurm-15.08.12-1.el6.x86_64.rpm >>> [root@cloudlg017223 x86_64]# pwd >>> */root/rpmbuild/RPMS/x86_64* >>> [root@cloudlg017223 x86_64]# >>> >>> >>> [root@cloudlg017223 x86_64]#* rpm -ivh >>> slurm-slurmdbd-15.08.12-1.el6.x86_64.rpm >>> slurm-munge-15.08.12-1.el6.x86_64.rpm slurm-sql-15.08.12-1.el6.x86_64.rpm* >>> Preparing... ########################################### >>> [100%] >>> file /apps/slurm/lib64/slurm/accounting_storage_mysql.so from >>> install of slurm-sql-15.08.12-1.el6.x86_64 conflicts with file from >>> package slurm-sql-14.11.3-1.el6.x86_64 >>> file /apps/slurm/lib64/slurm/jobcomp_mysql.so from install of >>> slurm-sql-15.08.12-1.el6.x86_64 conflicts with file from package >>> slurm-sql-14.11.3-1.el6.x86_64 >>> file /apps/slurm/sbin/slurmdbd from install of >>> slurm-slurmdbd-15.08.12-1.el6.x86_64 conflicts with file from package >>> slurm-slurmdbd-14.11.3-1.el6.x86_64 >>> file /apps/slurm/share/man/man5/slurmdbd.conf.5 from install of >>> slurm-slurmdbd-15.08.12-1.el6.x86_64 conflicts with file from package >>> slurm-slurmdbd-14.11.3-1.el6.x86_64 >>> file /apps/slurm/share/man/man8/slurmdbd.8 from install of >>> slurm-slurmdbd-15.08.12-1.el6.x86_64 conflicts with file from package >>> slurm-slurmdbd-14.11.3-1.el6.x86_64 >>> file /apps/slurm/lib64/slurm/auth_munge.so from install of >>> slurm-munge-15.08.12-1.el6.x86_64 conflicts with file from package >>> slurm-munge-14.11.3-1.el6.x86_64 >>> file /apps/slurm/lib64/slurm/crypto_munge.so from install of >>> slurm-munge-15.08.12-1.el6.x86_64 conflicts with file from package >>> slurm-munge-14.11.3-1.el6.x86_64 >>> [root@cloudlg017223 x86_64]# >>> >>> >>> >>> >>> Thanks & Regards, >>> Balaji Deivam >>> Staff Analyst - Business Data Center >>> Seagate Technology - 389 Disc Drive, Longmont, CO 80503 | 720-684- >>> <720-684-2363>*3395* >>> >>> On Thu, Aug 18, 2016 at 4:57 AM, Barbara Krasovec <[email protected]> >>> wrote: >>> >>>> Helllo! >>>> >>>> >>>> On 17/08/16 23:59, Balaji Deivam wrote: >>>> >>>> >>>> Hi, >>>> >>>> >>>>> Can someone give me the detailed step on "Upgrade the slurmdbd >>>>> daemon" ? >>>> >>>> >>>> I have downloaded the Slrum source tar file and looking for how to >>>> upgrade only the slurmdbd from that tar file. >>>> >>>> >>>> >>>> Thanks & Regards, >>>> Balaji Deivam >>>> Staff Analyst - Business Data Center >>>> Seagate Technology - 389 Disc Drive, Longmont, CO 80503 | 720-684- >>>> <720-684-2363>*3395* >>>> >>>> Did you mention the operating system you are using? In my case, I used >>>> rpm-s, so i have built rpms for the new version and then upgraded the >>>> following packages: slurm-slurmdbd, slurm-munge, slurm-sql >>>> >>>> Instructions on how to build/install SLURM: >>>> http://slurm.schedmd.com/quickstart_admin.html >>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__slurm.schedmd.com_quickstart-5Fadmin.html&d=DQMDaQ&c=IGDlg0lD0b-nebmJJ0Kp8A&r=6hUlkHlchkV1FY0jPZY7LgxwDqm80x8V4CQQBznS7Fo&m=ecrU6VEAB1VaaMp-iTJZecPij8IFGqVqHRux1BHwlkQ&s=q_sl6yUpOiwI6nLDqRQEUb1asvgqPHNkZNSUgxhm5og&e=> >>>> >>>> Cheers, >>>> >>>> Barbara >>>> >>> >>> >>> >> > >
