Hi,
We've got an exception using the Java DRMAA .... it's below.
Has anyone seen anything like this and or have a way to debug?
We've check all permissions on the files/dirs/etc..
SGE version sge-8.1.9
Using the drmaa jar and libdrmaa.so that came with the SGE version
If we remove munge from the equation it works, but we need to use munge.
Any help would be appreciated.
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edu.mayo.mprc.daemon.exception.DaemonException: Failed passing work packet to
grid engine:
GridWorkPacket:
qsub -q 1-day -wd /apps/prot/dev/local/swift/4.4.0/. -pe threaded 16 -l
s_vmem=M -pe threaded 16 /apps/prot/dev/local/swift/4.
+4.0/bin/util/sgeWrapper.sh java -Xmx2048m -cp
/apps/prot/dev/local/swift/4.4.0/lib/* edu.mayo.mprc.swift.Swift --sge
+/raw/software/apps/dev/local/swift/4.4.0/var/tmp/1-day_1600703160493
at edu.mayo.mprc.sge.GridRunner.processFailedJob(GridRunner.java:157)
at edu.mayo.mprc.sge.GridRunner.processRequest(GridRunner.java:142)
at
edu.mayo.mprc.daemon.AbstractRunner.requestReceived(AbstractRunner.java:123)
at
edu.mayo.mprc.daemon.AbstractRunner.access$000(AbstractRunner.java:27)
at
edu.mayo.mprc.daemon.AbstractRunner$SynchronousRequestReceiver.run(AbstractRunner.java:175)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: edu.mayo.mprc.MprcException: Error submitting to grid engine:
/apps/prot/dev/local/swift/4.4.0/bin/util/sgeWrapper.sh java
+-Xmx2048m -cp /apps/prot/dev/local/swift/4.4.0/lib/* edu.mayo.mprc.swift.Swift
--sge
+/raw/software/apps/dev/local/swift/4.4.0/var/tmp/1-day_1600703160493
at
edu.mayo.mprc.sge.GridEngineJobManagerImpl.passToGridEngine(GridEngineJobManagerImpl.java:155)
at edu.mayo.mprc.sge.GridRunner.processRequest(GridRunner.java:124)
... 6 more
Caused by: org.ggf.drmaa.DeniedByDrmException: MUNGE authentication failed:
Invalid credential format
error opening file "/home/schedulers/sge-8.1.9/default/spool/qmaster/users/."
for writing: Is a directory
at com.sun.grid.drmaa.SessionImpl.nativeRunJob(Native Method)
at com.sun.grid.drmaa.SessionImpl.runJob(SessionImpl.java:349)
at
edu.mayo.mprc.sge.GridEngineJobManagerImpl.runJob(GridEngineJobManagerImpl.java:169)
at
edu.mayo.mprc.sge.GridEngineJobManagerImpl.passToGridEngine(GridEngineJobManagerImpl.java:147)
... 7 more
--
-------
Karen Magee Unix Systems Coordinator - RCF
Mayo Clinic Internet: ma...@mayo.edu
200 1st St SW Phone: (507) 284-1806
Rochester, MN 55905
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