Hello, I am trying to start an LS-DYNA job through SGE but have no experience writing scripts and submitting jobs to a cluster. I have the basic structure figured out from looking at examples online, but am not able to successfully execute my script. Most likely something is wrong in the way I am calling mpirun and the LD_LIBRARY_PATH. Any suggestions on how to correct my script?
Thanks! Jessica Command line: $ qsub -pe mpi 16 script.sh Here's my script: #!/bin/bash #$ -S /bin/bash #$ -cwd #$ -V #$ -N lsdyna_test5 #$ -j y #$ -o lsdyna-test5.out ############################################################ export MPI_HOME=/opt/gridengine export PATH=$MPI_HOME/bin:$PATH export LD_LIBRARY_PATH=#$MPI_HOME/lib/linux-x64:$LD_LIBRARY_PATH export MPIRUN=$MPI_HOME/mpi/myrinet/sge_mpirun # export LSDYNA=/ansys_inc/v170/ansys/bin/lsdyna170 export LSTC_LICENSE=NETWORK export LSTC_LICENSE_SERVER=swlic01.s.uw.edu export LSTC_MEMORY=auto export PATH=/ansys_inc/v170/ansys # $MPIRUN -TCP -np $NSLOTS -hostfile $TMPDIR/machines $LSDYNA i=LSDYNAexport.k echo "Program ended" Here's my output file: /opt/gridengine/edfault/spool/compute-2-0/active_jobs/28.1/pe_hostfile compute-2-0 compute-2-0 compute-2-0 compute-2-0 compute-2-0 compute-2-0 compute-2-0 compute-2-0 compute-2-12 compute-2-12 compute-2-12 compute-2-12 compute-2-12 compute-2-12 compute-2-12 compute-2-12 /opt/gridengine/edfault/spool/compute-2-0/job_scripts/28: line 23: opt/gridengine/mpi/myrinet/sge_mpirun : No such file or directory Program ended rm: cannot remove `/tmp/28.1.all.q/rsh': No such file or directory _______________________________________________ SGE-discuss mailing list SGE-discuss@liv.ac.uk https://arc.liv.ac.uk/mailman/listinfo/sge-discuss
