[OMPI users] performance of MPI_Iallgatherv

2014-04-05 Thread Zehan Cui
Hi, I'm testing the non-blocking collective of OpenMPI-1.8. I have two nodes with Infiniband to perform allgather on totally 128MB data. I split the 128MB data into eight pieces, and perform computation and MPI_Iallgatherv() on one piece of data each iteration, hoping that the MPI_Iallgatherv()

Re: [OMPI users] performance of MPI_Iallgatherv

2014-04-06 Thread Zehan Cui
is > what non blocking collectives are made for!) > > Cheers, > > Matthieu > > 2014-04-05 10:35 GMT+01:00 Zehan Cui : >> Hi, >> >> I'm testing the non-blocking collective of OpenMPI-1.8. >> >> I have two nodes with Infiniband to perform allga

Re: [OMPI users] performance of MPI_Iallgatherv

2014-04-08 Thread Zehan Cui
nd. > > Cheers, > > 2014-04-07 4:12 GMT+01:00 Zehan Cui : > > Hi Matthieu, > > > > Thanks for your suggestion. I tried MPI_Waitall(), but the results are > > the same. It seems the communication didn't overlap with computation. > > > > Reg

Re: [OMPI users] how to get mpirun to scale from 16 to 64 cores

2014-06-16 Thread Zehan Cui
Hi Yuping, Maybe using multi-threads inside a socket, and MPI among sockets is better choice for such NUMA platform. Multi-threads can exploit the benefit of share memory, and MPI can alleviate the cost of non-uniform memory access. regards, Zehan On Tue, Jun 17, 2014 at 6:19 AM, Yuping Sun

[OMPI users] unknow option "--tree-spawn" with OpenMPI-1.7.1

2013-06-14 Thread Zehan Cui
cess whose contact information is unknown in file base/grpcomm_base_xcast.c at line 166 I have run it on several nodes, and got the same messages. - Zehan Cui

Re: [OMPI users] unknow option "--tree-spawn" with OpenMPI-1.7.1

2013-06-14 Thread Zehan Cui
/em64t:/home/cmy/tgm/hpx/build/linux/lib:/home/cmy/yanjie/boost/lib:/usr/local/mvapich2/lib:/home/cmy/yanjie/qthread/lib:/opt/gridviewnew/pbs//dispatcher//lib::/usr/local/lib64:/usr/local/lib:/home/cmy/zxx/work_spring_2011/iaca-lin32/lib [cmy@gnode100 ~]$ Best Regards Zehan Cui(崔泽汉

Re: [OMPI users] unknow option "--tree-spawn" with OpenMPI-1.7.1

2013-06-14 Thread Zehan Cui
Thanks. That's exactly the problem. When add prefix to the mpirun command, everything goes fine. - Zehan Cui On Fri, Jun 14, 2013 at 10:25 PM, Jeff Squyres (jsquyres) < jsquy...@cisco.com> wrote: > Check the PATH you get when you run non-interactively on the remote >

[OMPI users] MPI_Iallgatherv performance

2013-06-14 Thread Zehan Cui
wait for the non-blocking MPI_Iallgatherv to finish. - Zehan Cui