I am experiencing an error with an application called MPIBLAST. I am
trying to understand more about what this error represents in terms of
this application:
mpiblast_writer.cppStreamliner::CalculateMessageSizes - miscalculate
message sizes
Is this a problem with openmpi, infiniband or something
d to the
torque list and someone suggested that it may be temporary directory
space that can be causing issues. I have 100MB allocated to /tmp
Any ideas as to why I am having this problem would be appreciated.
--
Randall Svancara
http://knowyourlinux.com/
emon tries to create a session directory in
> the tmp dir, so failure to do so would indeed cause the launch to fail. You
> can specify the tmp dir with a cmd line option to mpirun. See "mpirun -h" for
> info.
>
>
> On Mar 21, 2011, at 12:21 AM, Randall Svancara wrote:
fairly illusive and contributing to premature
baldness.
On Mon, Mar 21, 2011 at 11:03 AM, Ralph Castain wrote:
>
> On Mar 21, 2011, at 11:53 AM, Randall Svancara wrote:
>
>> I am not sure if there is any extra configuration necessary for torque
>> to forward the environment.
lly not installed by default, and need to be available on
> all nodes since Torque starts mpiexec on a backend node.
>
>>
>>
>> On Mar 21, 2011, at 1:53 PM, Randall Svancara wrote:
>>
>>> I am not sure if there is any extra configuration necessary for torque
>
support library(ies?) may not
>> be installed by default. You may have to ensure that they're available on
>> all nodes...?
>>
>>
>> On Mar 21, 2011, at 1:53 PM, Randall Svancara wrote:
>>
>>> I am not sure if there is any extra configuration ne
message is
indeed somewhat accurate.
So the next question is how to I ensure that this information is
available to pbsdsh?
Thanks,
Randall
On Mon, Mar 21, 2011 at 11:24 AM, Randall Svancara wrote:
> Ok, these are good things to check. I am going to follow through with
> this in the nex
>
>
> On Mar 21, 2011, at 1:19 PM, Randall Svancara wrote:
>
>> Hi. The pbsdsh tool is great. I ran an interactive qsub session
>> (qsub -I -lnodes=2:ppn=12) and then rand the pbsdsh tool like this:
>>
>> [rsvancara@node164 ~]$ /usr/local/bin/pbsdsh -h node
everyone's valuable comments.
On Mon, Mar 21, 2011 at 12:38 PM, Randall Svancara wrote:
> Yeah, the system admin is me lol.and this is a new system which I
> am frantically trying to work out all the bugs. Torque and MPI are my
> last hurdles to overcome. But I have already bee
64 does have:
> [root@aeolus modulefiles]# ls /opt/torque/lib64
> libtorque.a libtorque.la libtorque.so libtorque.so.2 libtorque.so.2.0.0
>
> so I'm a bit dumbfounded as to why configure doesn't "find" torque
> support...Any suggestions?
>
> --Jim
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--
Randall Svancara
http://knowyourlinux.com/
anything is required -
> it will just always do it.
> >>
> >> Would you mind giving it a try?
> >>
> >> Please let me know if/how it works.
> >>
> >> ___
> >> users mailing list
> >> us...@open-mpi.org
> >> http://www.open-mpi.org/mailman/listinfo.cgi/users
> >
> >
> > ___
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> > http://www.open-mpi.org/mailman/listinfo.cgi/users
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>
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> users mailing list
> us...@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
--
Randall Svancara
http://knowyourlinux.com/
etween compute nodes
> in order for mpi applications to run correctly.
>
> Thanks
>
> ___
> users mailing list
> us...@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
--
Randall Svancara
Know Your Linux? <http://www.knowyourlinux.com/>
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