[OMPI users] Deadlock in netcdf tests

2019-10-24 Thread Orion Poplawski via users
Starting with netcdf 4.7.1 (and 4.7.2) in Fedora Rawhide we are seeing a test hang with openmpi 4.0.2. Backtrace: (gdb) bt #0 0x7f90c197529b in sched_yield () from /lib64/libc.so.6 #1 0x7f90c1ac8a05 in ompi_request_default_wait () from /usr/lib64/openmpi/lib/libmpi.so.40 #2 0x7f

Re: [OMPI users] Deadlock in netcdf tests

2019-10-24 Thread Orion Poplawski via users
On 10/24/19 9:28 PM, Orion Poplawski via users wrote: Starting with netcdf 4.7.1 (and 4.7.2) in Fedora Rawhide we are seeing a test hang with openmpi 4.0.2.  Backtrace: (gdb) bt #0  0x7f90c197529b in sched_yield () from /lib64/libc.so.6 #1  0x7f90c1ac8a05 in ompi_request_default_wait

Re: [OMPI users] Deadlock in netcdf tests

2019-10-25 Thread Orion Poplawski via users
vulcan component. That can be achieved by mpirun --mca fcoll ^vulcan ... or OMPI_MCA_fcoll=^vulcan mpirun ... I also noted the tst_parallel3 program crashes with the ROMIO component. Cheers, Gilles On 10/25/2019 12:55 PM, Orion Poplawski via users wrote: On 10/24/19 9:28 PM, Orion Poplawski via

Re: [OMPI users] Deadlock in netcdf tests

2019-10-26 Thread Orion Poplawski via users
rashes with the ROMIO component. Cheers, Gilles On 10/25/2019 12:55 PM, Orion Poplawski via users wrote: On 10/24/19 9:28 PM, Orion Poplawski via users wrote: Starting with netcdf 4.7.1 (and 4.7.2) in Fedora Rawhide we are seeing a test hang with openmpi 4.0.2. Backtrace: (gdb) bt #0