[OMPI users] IBM Spectrum MPI problem

2017-05-18 Thread Gabriele Fatigati
and potentially your MPI job) My sysadmin used official IBM Spectrum packages to install MPI, so It's quite strange that there are some components missing (pami). Any help? Thanks -- Ing. Gabriele Fatigati HPC specialist SuperComputing Applications and Innovation Department Via Magnanel

Re: [OMPI users] IBM Spectrum MPI problem

2017-05-18 Thread Gabriele Fatigati
Hi Reuti, I think is it freely available. I posted also on IBM Spectrum forum, I'm waiting some reply. 2017-05-18 14:10 GMT+02:00 Reuti : > Hi, > > > Am 18.05.2017 um 14:02 schrieb Gabriele Fatigati : > > > > Dear OpenMPI users and developers, I'm using IBM Spec

Re: [OMPI users] IBM Spectrum MPI problem

2017-05-18 Thread Gabriele Fatigati
t; > > On 18 May 2017 at 14:10, Reuti wrote: > >> Hi, >> >> > Am 18.05.2017 um 14:02 schrieb Gabriele Fatigati > >: >> > >> > Dear OpenMPI users and developers, I'm using IBM Spectrum MPI 10.1.0 >> >> I noticed this on IBM'

Re: [OMPI users] IBM Spectrum MPI problem

2017-05-18 Thread Gabriele Fatigati
l > for example > ldd a.out > should only point to IBM libraries > > Cheers, > > Gilles > > > On Thursday, May 18, 2017, Gabriele Fatigati wrote: > >> Dear OpenMPI users and developers, I'm using IBM Spectrum MPI 10.1.0 based >> on OpenMPI, so I hop

Re: [OMPI users] IBM Spectrum MPI problem

2017-05-18 Thread Gabriele Fatigati
he output ? > > > Cheers, > > Gilles > > On 5/18/2017 10:41 PM, Gabriele Fatigati wrote: > >> Hi Gilles, attached the requested info >> >> 2017-05-18 15:04 GMT+02:00 Gilles Gouaillardet < >> gilles.gouaillar...@gmail.com <mailto:gilles.gouaill

Re: [OMPI users] IBM Spectrum MPI problem

2017-05-19 Thread Gabriele Fatigati
correct drivers or libraries loaded. > > I have had similar messages when using Infiniband on x86 systems - which > did not have libibverbs installed. > > > On 19 May 2017 at 08:41, Gabriele Fatigati wrote: > >> Hi Gilles, using your command: >> >> [openpower:88

[OMPI users] Fwd: IBM Spectrum MPI problem

2017-05-19 Thread Gabriele Fatigati
-- Forwarded message -- From: Gabriele Fatigati Date: 2017-05-19 9:07 GMT+02:00 Subject: Re: [OMPI users] IBM Spectrum MPI problem To: John Hearns If I understand well, when I launch mpirun by default try to use Infiniband, but because there are no infiniband module the run

Re: [OMPI users] IBM Spectrum MPI problem

2017-05-19 Thread Gabriele Fatigati
t work, can run and post the logs) > > mpirun --mca pml ^pami --mca pml_base_verbose 100 ... > > > Cheers, > > > Gilles > > > On 5/19/2017 4:01 PM, Gabriele Fatigati wrote: > >> Hi John, >> Infiniband is not used, there is a single node on this mach

Re: [OMPI users] IBM Spectrum MPI problem

2017-05-19 Thread Gabriele Fatigati
parameter "orte_base_help_aggregate" to 0 to see all help / error messages [openpower:88867] 1 more process has sent help message help-mpi-runtime.txt / mpi_init:startup:pml-add-procs-fail 2017-05-19 9:22 GMT+02:00 Gabriele Fatigati : > Hi GIlles, > > using your command with one MPI procs

Re: [OMPI users] IBM Spectrum MPI problem

2017-05-19 Thread Gabriele Fatigati
e the physical interface cards in >>> these systems, but you do not have the correct drivers or >>> libraries loaded. >>> >>> I have had similar messages when using Infiniband on x86 systems - >>> which did not have libibverbs installed

Re: [OMPI users] IBM Spectrum MPI problem

2017-05-19 Thread Gabriele Fatigati
> > > Cheers, > > > Gilles > > > > On 5/19/2017 4:23 PM, Gabriele Fatigati wrote: > >> Oh no, by using two procs: >> >> >> findActiveDevices Error >> We found

Re: [OMPI users] IBM Spectrum MPI problem

2017-05-19 Thread Gabriele Fatigati
; Gilles > > On 5/19/2017 4:28 PM, Gabriele Fatigati wrote: > >> Using: >> >> mpirun --mca pml ^pami --mca pml_base_verbose 100 -n 2 ./prova_mpi >> >> I attach the output >> >> 2017-05-19 9:16 GMT+02:00 John Hearns via users > <mailto:users@l

Re: [OMPI users] IBM Spectrum MPI problem

2017-05-19 Thread Gabriele Fatigati
to is that >> their license manager is blocking you from running, albeit without a really >> nice error message. I’m sure that’s something they are working on. >> >> If you really want to use Spectrum MPI, I suggest you contact them about >> purchasing it. >> >

[OMPI users] MPI_Reduce performance

2010-09-08 Thread Gabriele Fatigati
enMPI. I suspect the same for others collective communications. Someone can explaine me why MPI_reduce has this strange behaviour? Thanks in advance. -- Ing. Gabriele Fatigati Parallel programmer CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casale

Re: [OMPI users] MPI_Reduce performance

2010-09-09 Thread Gabriele Fatigati
gt; Ph: (+61) 0417 163 509Skype: terry.frankcombe > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > -- Ing. Gabriele Fatigati Parallel programmer CINECA Systems & Tecnologies Department Supercomp

Re: [OMPI users] MPI_Reduce performance

2010-09-09 Thread Gabriele Fatigati
National University > Ph: (+61) 0417 163 509Skype: terry.frankcombe > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > -- Ing. Gabriele Fatigati Parallel programmer CINECA S

Re: [OMPI users] MPI_Reduce performance

2010-09-09 Thread Gabriele Fatigati
gt; > On Sep 9, 2010, at 1:14 AM, Gabriele Fatigati wrote: > > More in depth, > > total execution time without Barrier is about 1 sec. > > Total execution time with Barrier+Reduce is 9453, with 128 procs. > > 2010/9/9 Terry Frankcombe > >> Gabriele, >>

Re: [OMPI users] MPI_Reduce performance

2010-09-09 Thread Gabriele Fatigati
gt; Yes, however, it seems Gabriele is saying the total execution time > *drops* by ~500 s when the barrier is put *in*. (Is that the right way > around, Gabriele?) > > That's harder to explain as a sync issue. > > > > > On Sep 9, 2010, at 1:14 AM, Gabriele Fatigat

[OMPI users] BTL layer

2010-09-22 Thread Gabriele Fatigati
collective routine, performances can have very different behaviour. Thanks a lot. -- Ing. Gabriele Fatigati Parallel programmer CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy www.cineca.itTel: +39 051 61717

Re: [OMPI users] BTL layer

2010-09-22 Thread Gabriele Fatigati
Thanks Jeff, and.. what about RDMA? It works only with point-to-point or also with collectives? 2010/9/22 Jeff Squyres > On Sep 22, 2010, at 3:46 AM, Gabriele Fatigati wrote: > > > i'm tuning collectives of OpenMPI 1.4.2 with OTPO. I have a little > question about BTL. Th

[OMPI users] Question about Asynchronous collectives

2010-09-23 Thread Gabriele Fatigati
collective more time on one communicator, but is it possible with different collectives? Thanks a lot. -- Ing. Gabriele Fatigati Parallel programmer CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy www.cineca.it

Re: [OMPI users] Question about Asynchronous collectives

2010-09-23 Thread Gabriele Fatigati
ocess MPI_IBcast(MPI_COMM_WORLD, request_1) // second Bcast for another process Because first Bcast of second process matches with first Bcast of first process, and it's wrong. Is it right? 2010/9/23 Jeff Squyres > On Sep 23, 2010, at 6:28 AM, Gabriele Fatigati wrote: > >

Re: [OMPI users] Question about Asynchronous collectives

2010-09-23 Thread Gabriele Fatigati
; > From: > Jeff Squyres > To: Open MPI Users Date: 09/23/2010 10:13 AM Subject: Re: > [OMPI users] Question about Asynchronous collectives Sent by: > users-boun...@open-mpi.org > -- > > > > On Sep 23, 2010, at 10:00 AM, Gabriele Fatigati wrote: > > &

[OMPI users] Memory affinity

2010-09-27 Thread Gabriele Fatigati
Dear OpenMPI users, if OpenMPI is numa-compiled, memory affinity is enabled by default? Because I didn't find memory affinity alone ( similar) parameter to set at 1. Thanks a lot. -- Ing. Gabriele Fatigati Parallel programmer CINECA Systems & Tecnologies Department Supercomput

Re: [OMPI users] Memory affinity

2010-09-27 Thread Gabriele Fatigati
Sorry, memory affinity is enabled by default setting mprocessor_affinity=1 in OpenMPI-numa? 2010/9/27 Gabriele Fatigati > Dear OpenMPI users, > > if OpenMPI is numa-compiled, memory affinity is enabled by default? Because > I didn't find memory affinity alone ( similar) para

Re: [OMPI users] Memory affinity

2010-09-27 Thread Gabriele Fatigati
finity? This is my question.. 2010/9/27 Tim Prince > >  On 9/27/2010 9:01 AM, Gabriele Fatigati wrote: >> >> if OpenMPI is numa-compiled, memory affinity is enabled by default? Because >> I didn't find memory affinity alone ( similar)  parameter to set at 1.

[OMPI users] Argument parsing issue

2011-01-27 Thread Gabriele Fatigati
/a.out a b "c d" Argument parsing doesn't work well. Arguments passed are: a b c d and not a b "c d" I think there is an issue in parsing the arguments invoking Totalview. Is this a bug into mpirun or i need to do it in other way? Thanks in forward. -- Ing. Gabrie

Re: [OMPI users] Argument parsing issue

2011-01-27 Thread Gabriele Fatigati
Mm, doing as you suggest the output is: a b "c d" and not: a b "c d" 2011/1/27 Reuti > Hi, > > Am 27.01.2011 um 09:48 schrieb Gabriele Fatigati: > > > Dear OpenMPI users and developers, > > > > i'm using OpenMPI 1.4.3 and Intel compil

Re: [OMPI users] Argument parsing issue

2011-01-27 Thread Gabriele Fatigati
The problem is how mpirun scan input parameters when Totalview is invoked. There is some wrong behaviour in the middle :( 2011/1/27 Reuti > Am 27.01.2011 um 10:32 schrieb Gabriele Fatigati: > > > Mm, > > > > doing as you suggest the output is: > > > > a

Re: [OMPI users] Argument parsing issue

2011-01-27 Thread Gabriele Fatigati
es are lost in the process. > > Just start your debugged job with "totalview mpirun ..." and it should work > fine. > > On Jan 27, 2011, at 3:00 AM, Gabriele Fatigati wrote: > > The problem is how mpirun scan input parameters when Totalview is invoked. > > The

Re: [OMPI users] Argument parsing issue

2011-01-27 Thread Gabriele Fatigati
> > > Just start your debugged job with "totalview mpirun ..." and it should > work fine. > > > > On Jan 27, 2011, at 3:00 AM, Gabriele Fatigati wrote: > > > >> The problem is how mpirun scan input parameters when Totalview is > invoked. > >

Re: [OMPI users] Argument parsing issue

2011-01-28 Thread Gabriele Fatigati
u try the attached > patch to a trunk nightly tarball and see if that works for you? > > If it does, I can provide patches for v1.4 and v1.5 (the code moved a bit > between these 3 versions, so I would need to adapt the patches a little). > > > > On Jan 27, 2011, at 9:06

Re: [OMPI users] Argument parsing issue

2011-01-28 Thread Gabriele Fatigati
Good! Thanks for your support! Regards. 2011/1/28 Jeff Squyres > Thanks for the confirmation. > > I committed the fix to the trunk as of r24322 and filed CMR's for v1.4 and > v1.5. > > > > On Jan 28, 2011, at 2:50 AM, Gabriele Fatigati wrote: > > > Hi

[OMPI users] MPI_File_Read_all and large file

2011-03-02 Thread Gabriele Fatigati
with Totalview, the problem appears in a line 188 of ompi/mca/io/romio/romio/adio/ad_nfs/ad_nfs_read.c: MPI_Type_size(fd->filetype, &filetype_size); here there is an explicit cast to int that can causes the problem. Someone can help me? Thanks in forward. -- Ing. Gabriele Fatiga

[OMPI users] MPI defined macro

2011-08-23 Thread Gabriele Fatigati
Dear OpenMPi users, is there some portable MPI macro to check if a code is compiled with MPI compiler? Something like _OPENMP for OpenMP codes: #ifdef _OPENMP #endif it exist? #ifdef MPI #endif Thanks -- Ing. Gabriele Fatigati HPC specialist SuperComputing Applications and

Re: [OMPI users] MPI defined macro

2011-08-23 Thread Gabriele Fatigati
r portability issue. :-\ > > On Aug 23, 2011, at 5:19 AM, Gabriele Fatigati wrote: > > > Dear OpenMPi users, > > > > is there some portable MPI macro to check if a code is compiled with MPI > compiler? Something like _OPENMP for OpenMP codes: > > > > #ifdef _O

[OMPI users] Memory mapped memory

2011-10-13 Thread Gabriele Fatigati
Dear OpenMPI users and developers, is there some limitation or issues to use memory mapped memory into MPI processes? I would like to share some memory in a node without using OpenM. Thanks a lot. -- Ing. Gabriele Fatigati HPC specialist SuperComputing Applications and Innovation Department

Re: [OMPI users] Memory mapped memory

2011-10-17 Thread Gabriele Fatigati
More in detail, is it possible use mmap() function from MPI process and sharing these memory between others processes? 2011/10/13 Gabriele Fatigati > Dear OpenMPI users and developers, > > is there some limitation or issues to use memory mapped memory into MPI > processes? I w

[OMPI users] MPI_AllGather null terminator character

2012-01-13 Thread Gabriele Fatigati
al jump or move depends on uninitialised value(s) ==19931==at 0x4A06E5C: strcmp (mc_replace_strmem.c:412) The same warning is not present if I use MAX_STRING_LEN+1 in MPI_Allgather. Thanks in forward. -- Ing. Gabriele Fatigati HPC specialist SuperComputing Applications and Innovation Dep

Re: [OMPI users] MPI_AllGather null terminator character

2012-01-26 Thread Gabriele Fatigati
Dear OpenMPi users/developers, anybody can help about such problem? 2012/1/13 Gabriele Fatigati > Dear OpenMPI, > > using MPI_Allgather with MPI_CHAR type, I have a doubt about > null-terminated character. Imaging I want to spawn node names where my > progra

Re: [OMPI users] MPI_AllGather null terminator character

2012-01-27 Thread Gabriele Fatigati
MPI_Comm_size(MPI_COMM_WORLD, &size); > >gethostname(hostname, MAX_LEN - 1); >where_null(hostname, MAX_LEN, rank); > >hostname_recv_buf = calloc(size * (MAX_LEN), (sizeof(char))); >MPI_Allgather(hostname, MAX_LEN, MPI_CHAR, > hostname_recv_buf, MAX_

Re: [OMPI users] MPI_AllGather null terminator character

2012-01-27 Thread Gabriele Fatigati
Sorry, this is the right code. 2012/1/27 Gabriele Fatigati > Hi Jeff, > > The problem is when I use strcmp on ALLGather buffer and Valgrind that > raise a warning. > > Please check if the attached code is right, where size(local_hostname) is > very small. > > Valg

Re: [OMPI users] MPI_AllGather null terminator character

2012-01-27 Thread Gabriele Fatigati
MPI is not looking for \0's; you gave it the > explicit length of the buffer), but if they weren't filled with \0's, then > the receiver's printf will have problems handling it. > > > > On Jan 27, 2012, at 4:03 AM, Gabriele Fatigati wrote: > > > Sorry, >

Re: [OMPI users] MPI_AllGather null terminator character

2012-01-27 Thread Gabriele Fatigati
iminate the warning, you should memset hostname_recv_buf to 0 so it has a > guaranteed value. > > On Jan 27, 2012, at 6:21 AM, Gabriele Fatigati wrote: > > Hi Jeff, > > yes, very stupid bug in a code, but also with the correction the problem > with Valgrind in strcmp rema

Re: [OMPI users] MPI_AllGather null terminator character

2012-01-28 Thread Gabriele Fatigati
and then alerting you later when you access > those secondary uninitialized bytes. > > If I'm right, you can memset the local_hostname buffer (or use calloc), > and then valgrind warnings will go away. > > > > On Jan 27, 2012, at 8:21 AM, Gabriele Fatigati wrote: >

Re: [OMPI users] MPI_AllGather null terminator character

2012-01-31 Thread Gabriele Fatigati
28, 2012, at 5:22 AM, Gabriele Fatigati wrote: > > > I had the same idea so my simple code I have already done calloc and > memset .. > > > > The same warning still appear using strncmp that should exclude > uninitialized bytes on hostnam_recv_buf :( > > Bummer. >

Re: [OMPI users] MPI_AllGather null terminator character

2012-01-31 Thread Gabriele Fatigati
Ok Jeff, thanks very much for your support! Regards, 2012/1/31 Jeff Squyres > On Jan 31, 2012, at 3:59 AM, Gabriele Fatigati wrote: > > > I have very interesting news. I recompiled OpenMPI 1.4.4 enabling the > memchecker. > > > > Now the warning on strcmp is disap

[OMPI users] (no subject)

2008-04-30 Thread Gabriele FATIGATI
e finished successful. Different values of eager limit dont' solve the problem. Thanks in advance. -- Gabriele Fatigati CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy www.cineca.it

[OMPI users] Problem with AlltoAll routine

2008-05-06 Thread Gabriele FATIGATI
ocessor or less, have finished successful. Different values of eager limit don't solve the problem. Version of OpenMPI involved is 1.2.5. There's someone with this kind of problem over Infiniband? Thanks in advance. -- Gabriele Fatigati CINECA Systems &

Re: [OMPI users] Problem with AlltoAll routine

2008-05-07 Thread Gabriele FATIGATI
oduce the problem. > > Thanks & Regards, > --Brad > > Brad Benton > IBM > > > On Tue, May 6, 2008 at 10:35 AM, Gabriele FATIGATI > wrote: > > > Hi, > > i tried to run SkaMPI 5.0.4 benchmark on IBM-BladeCenterLS21 system with > > 256 proce

Re: [OMPI users] (no subject)

2008-05-27 Thread Gabriele Fatigati
answered about a > similar situation: > > http://www.open-mpi.org/community/lists/users/2008/05/5657.php > > See if using the pml_ob1_use_early_completion flag works for you. > > > > On Apr 30, 2008, at 7:05 AM, Gabriele FATIGATI wrote: > > &

[OMPI users] Question about RDMA

2008-06-05 Thread Gabriele Fatigati
A btl: parameter "btl_openib_max_eager_rdma" (current value: "16") MCA btl: parameter "btl_openib_eager_rdma_num" (current value: "16") MCA btl: parameter "btl_openib_min_rdma_size" (current value: "1048576") MCA btl: parameter "btl_openib_max_rdma_size"

Re: [OMPI users] Question about RDMA

2008-06-06 Thread Gabriele Fatigati
allocates buffer of 2097152 K initially, but it allocates small buffer and reallocates buffer every time, with more large size. Is it possible? If no, which is the cause of similar performance? Another question: RDMA pipeline protocol for long messages, in OpenMPI 1.2.6 is setting by default? 2008/6

[OMPI users] OpenMPI bug?

2008-06-12 Thread Gabriele Fatigati
l. But, at runtime, i have ever the error above, very much time, and the program fails, with "undefined status". Is this an OpenMPI bug? -- Gabriele Fatigati CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy ww

Re: [OMPI users] OpenMPI bug?

2008-06-12 Thread Gabriele Fatigati
ot;q"(newval), "m"(*((volatile long*)addr)), "a"(oldval)* //<<<<< HERE : "memory"); return (int)ret; } in /opal/include/opal/sys/amd64/atomic.h, at line 89 The previous enviroment variable is GCC_BOUNDS_OPTS Thanks in ad

Re: [OMPI users] OpenMPI bug?

2008-06-13 Thread Gabriele Fatigati
/opal/class/opal_object.h: . All errors are generated by same line code: util/sys_info.c, line 43 Final status of MPI Job is ever "Undefined". Another bug? 2008/6/12 Gabriele Fatigati : > I found that the error starts in this line code: > > static opal_

Re: [OMPI users] OpenMPI bug?

2008-06-13 Thread Gabriele Fatigati
<< HERE : "memory"); return (int)ret; } 2008/6/13 Gabriele Fatigati : > Maybe, i solved this bug, deleting long cast. > Now, in compile time, it works well, but at runtime, there are other > problems, like this: > > ../../../opal/class/

[OMPI users] OpenMPI with bounds checking

2008-06-14 Thread Gabriele Fatigati
ur. I tried to increase various Infiniband timeout, like btl_openib_ib_timeout, orte_abort_timeout and btl_openib_ib_min_rnr_timer without results. Thanks in advance. -- Gabriele Fatigati CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di

Re: [OMPI users] OpenMPI with bounds checking

2008-06-17 Thread Gabriele Fatigati
7;t know why it would fail. > There could be weird interactions between the OFED stack and xgcc...? > (i.e., memory "appears" from the kernel via ibv_* function calls, etc.) > > > > On Jun 14, 2008, at 7:58 AM, Gabriele Fatigati wrote: > > Hi Open MPI developers,

Re: [OMPI users] OpenMPI with bounds checking

2008-06-19 Thread Gabriele Fatigati
o I don't know why it would fail. > There could be weird interactions between the OFED stack and xgcc...? > (i.e., memory "appears" from the kernel via ibv_* function calls, etc.) > > > > On Jun 14, 2008, at 7:58 AM, Gabriele Fatigati wrote: > > Hi Open MPI

Re: [OMPI users] OpenMPI with bounds checking

2008-06-19 Thread Gabriele Fatigati
Just a moment: i didn't compile OpenMPI with bounds checking, but only my application. Problems with OMPI compiled with bound checking remains. 2008/6/19 Jeff Squyres : > On Jun 19, 2008, at 11:25 AM, Gabriele Fatigati wrote: > > Hi Jeff, >> i solved using Gigabit ne

Re: [OMPI users] OpenMPI with bounds checking

2008-06-19 Thread Gabriele Fatigati
>does the gcc bounds checking stuff give you the possibility of saying "this memory is ok"? I think yes. 2008/6/19 Gabriele Fatigati : > Just a moment: > > i didn't compile OpenMPI with bounds checking, but only my application. > Problems with OMPI compil

Re: [OMPI users] OpenMPI with bounds checking

2008-06-24 Thread Gabriele Fatigati
Hi Jeff, sorry for the delay. When i have little time, i'll check OMPI trunck with bound checking. When is the deliver date of 1.3 version? 2008/6/20 Jeff Squyres : > On Jun 19, 2008, at 11:47 AM, Gabriele Fatigati wrote: > > i didn't compile OpenMPI with bounds ch

Re: [OMPI users] Object Send Doubt

2008-07-13 Thread Gabriele Fatigati
gt; ). >Mas eu não consegui resolvê-lo para objetos em C++. > > Thank you, > Grato, > > Carlos > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > -

Re: [OMPI users] Object Send Doubt

2008-07-13 Thread Gabriele Fatigati
(\___/) > (+'.'+) > (")_(") > This is Bunny. Copy and paste Bunny into your > signature to help him gain world domination! > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > -- Gabriele Fatigati CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy www.cineca.it Tel: +39 051 6171722 g.fatig...@cineca.it

[OMPI users] Checkpoint and restart

2008-07-22 Thread Gabriele Fatigati
tool or other? And, when i restart my application, is it possible to modify the initial number of processors? -- Gabriele Fatigati CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy www.cineca.it Tel: +39 051 6171722 g.f

[OMPI users] Parallel I/O with MPI-1

2008-07-23 Thread Gabriele Fatigati
node, not for all. I can have two or more process of different nodes that writes concurrent in the file. Is this dangerous or not? It's depends by file system? I'm using MPI-1 under OpenMPI. Thanks. -- Gabriele Fatigati CINECA Systems & Tecnologies Department Supercomput

Re: [OMPI users] Parallel I/O with MPI-1

2008-07-23 Thread Gabriele Fatigati
bles using MPI I/O with Open MPI. > > Have fun, >george. > > > On Jul 23, 2008, at 11:51 AM, Gabriele Fatigati wrote: > > >> Hi, >> i have a question about parallel i/o. In my application, actually i have >> implemented a file lock with C system c

Re: [OMPI users] Parallel I/O with MPI-1

2008-07-23 Thread Gabriele Fatigati
is ROMIO? Where can i find any informations? Thanks a lot! 2008/7/23 Jeff Squyres : > On Jul 23, 2008, at 6:35 AM, Gabriele Fatigati wrote: > > >There is a whole chapter in the MPI standard about file I/O operations. >> I'm quite confident you will find whatever you're

Re: [OMPI users] C or C++ or Fortran?

2008-07-27 Thread Gabriele Fatigati
ers mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > -- Gabriele Fatigati CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy www.cineca.it Tel: +39 051 6171722 g.fatig...@cineca.it

[OMPI users] OpenMPI 1.4 nightly

2008-07-31 Thread Gabriele Fatigati
nable-mpi-threads --enable-ft-thread --with-ft=cr -with-blcr=/prod/tools/blcr/0.7.1/gnu--4.1.2 (and other, but less important). Where is the problem? This version is very instable? -- Gabriele Fatigati CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casal

Re: [OMPI users] OpenMPI 1.4 nightly

2008-07-31 Thread Gabriele Fatigati
pment head, so all > the normal rules and disclaimers apply (it's *generally* stable, but > sometimes things break). > > > > On Jul 31, 2008, at 10:27 AM, Gabriele Fatigati wrote: > > >> Dear OpenMPI users, >> i have installed OpenMPI 1.4 nigthly over IBM BL

Re: [OMPI users] OpenMPI 1.4 nightly

2008-07-31 Thread Gabriele Fatigati
at being said, the v1.4 nightly is our normal development head, so all > the normal rules and disclaimers apply (it's *generally* stable, but > sometimes things break). > > > > On Jul 31, 2008, at 10:27 AM, Gabriele Fatigati wrote: > > >> Dear OpenMPI users, >>

Re: [OMPI users] OpenMPI 1.4 nightly

2008-07-31 Thread Gabriele Fatigati
I'm using 9005. I'll try last version. Thanks. 2008/7/31 Lenny Verkhovsky > try to use only openib > > make sure you use nightly after r19092 > > On 7/31/08, Gabriele Fatigati wrote: >> >> Mm, i've tried to disable shared memory but the problem rema

[OMPI users] Checkpoint problem

2008-08-20 Thread Gabriele Fatigati
nt working directory [node0316:20134] [[42404,0],0] ORTE_ERROR_LOG: Not found in file orte-checkpoint.c at line 395 [node0316:20134] HNP with PID 20109 Not found! I don't understand why OpenMPI doesn't find that log file. Any idea? Thanks in advance. -- Gabriele Fatigati CINECA S

Re: [OMPI users] Checkpoint problem

2008-08-23 Thread Gabriele Fatigati
t; > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > -- > Tim Mattox, Ph.D. - http://homepage.mac.com/tmattox/ > tmat...@gmail.com || timat...@open-mpi.org > I'm a bright... http://www.the-brights.net/ > _

[OMPI users] MPI Finalize

2008-09-19 Thread Gabriele Fatigati
don't use MPI_Barrier. So, this error is caused by internal MPI_Barrier into MPI_Finalize. I've noted that if i disable MPI-2 I/O routine, application works well. Is there a strange effect of MPI_Finalize under MPI2 related MPI_File_open, MPI_File_close, MPI_File_Reat_at routines? -- Ga

Re: [OMPI users] MPI Finalize

2008-09-20 Thread Gabriele Fatigati
Yes, problem solved. There was opened file. Thanks ! 2008/9/20 Tim Mattox > This sounds like you have left a file open when using the MPI-2 I/O. > You need to MPI_File_close() any files you have opened. > > On Fri, Sep 19, 2008 at 6:10 PM, Gabriele Fatigati > wrote: > > H

[OMPI users] MPI_THREAD_INIT

2008-09-29 Thread Gabriele Fatigati
the unique thread level supported is MPI_THREAD_SINGLE. Whitch is the newest OpenMPI version that has full support for MPI_THREAD_SINGLE, MPI_THREAD_FUNNELED, MPI_THREAD_SERIALIZED and MPI_THREAD_MULTIPLE? Thanks in advance. -- Ing. Gabriele Fatigati CINECA Systems & Tecnolog

Re: [OMPI users] MPI_THREAD_INIT

2008-09-29 Thread Gabriele Fatigati
type of code? What does it means that OpenMPI doesn't support all thread levels of MPI_INIT_THREAD? 2008/9/29 Gabriele Fatigati > Dear OpenMPi developers, > i've noted that OpenMPI 1.25 and 1.2.6 version doesn't supports thread > initialization function shows below: >

Re: [OMPI users] MPI_THREAD_INIT

2008-09-29 Thread Gabriele Fatigati
ive you more > info) to your configure. If you plan to use threads with Open MPI I strongly > suggest to update to the 1.3. This version is not yet released, but you can > download the source from the nightly build section. > > george. > > > > On Sep 29, 2008, at 9:58 AM

Re: [OMPI users] mpi2c++ map?

2008-10-03 Thread Gabriele Fatigati
? because i am getting > errors regarding STL_map. > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > -- Ing. Gabriele Fatigati CINECA Systems & Tecnologies Department

[OMPI users] Possibile OpenMPI bug

2009-07-17 Thread Gabriele Fatigati
d by LSF and OpenMPI. I have launched 255 procs and there are 161 task.. very very strange. Any idea? Thanks in advance. -- Ing. Gabriele Fatigati Parallel programmer CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy www.cineca.i

[OMPI users] Totalview and OpenMPI problem solved

2009-08-12 Thread Gabriele Fatigati
. -- Ing. Gabriele Fatigati Parallel programmer CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy www.cineca.itTel: +39 051 6171722 g.fatigati [AT] cineca.it

[OMPI users] MPi Abort verbosity

2010-02-24 Thread Gabriele Fatigati
.. But i'm interesting just called rank. Is it possible? Thanks in advance. I'm using openmpi 1.2.2 -- Ing. Gabriele Fatigati Parallel programmer CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy www.cineca.it

Re: [OMPI users] MPi Abort verbosity

2010-02-24 Thread Gabriele Fatigati
can upgrade my OpenMPI if necessary. Thanks. 2010/2/24 Nadia Derbey > On Wed, 2010-02-24 at 09:55 +0100, Gabriele Fatigati wrote: > > > > Dear Openmpi users and developers, > > > > i have a question about MPI_Abort error message. I have a program > > written in C+

Re: [OMPI users] MPi Abort verbosity

2010-02-24 Thread Gabriele Fatigati
Yes, of course, but i would like to know if there is any way to do that with openmpi 2010/2/24 jody > Hi Gabriele > you could always pipe your output through grep > > my_app | grep "MPI_ABORT was invoked" > > jody > > On Wed, Feb 24, 2010 at 11:28 AM, Gabrie

Re: [OMPI users] MPi Abort verbosity

2010-02-24 Thread Gabriele Fatigati
u could try adding the --quiet option to your mpirun cmd line. This will > help eliminate some (maybe not all) of the verbage. > > > On Feb 24, 2010, at 6:36 AM, Jed Brown wrote: > > > On Wed, 24 Feb 2010 14:21:02 +0100, Gabriele Fatigati < > g.fatig...@cineca.it> wrote

[OMPI users] btl_tcp_if_exclude param

2010-04-13 Thread Gabriele Fatigati
-- Ing. Gabriele Fatigati Parallel programmer CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy www.cineca.itTel: +39 051 6171722 g.fatigati [AT] cineca.it

Re: [OMPI users] btl_tcp_if_exclude param

2010-04-13 Thread Gabriele Fatigati
quot; or " > 192.168.0.0/16,10.1.4.0/24"). Mutually exclusive with btl_tcp_if_include. > mca:btl:tcp:param:btl_tcp_if_exclude:deprecated:no > $ > > > Did your TCP BTL plugin somehow not get built / installed? > > > On Apr 13, 2010, at 6:06 AM, Gabriele Fatigati wrote: > > > Dear OpenMPI users and

Re: [OMPI users] btl_tcp_if_exclude param

2010-04-13 Thread Gabriele Fatigati
o file (and probably a .la file > as well). If the .so is not there, then the BTL TCP plugin is not installed > (which would be darn weird, to be honest...). > > > On Apr 13, 2010, at 8:23 AM, Gabriele Fatigati wrote: > > > Hi Jeff, > > > > thaks for your reply

Re: [OMPI users] btl_tcp_if_exclude param

2010-04-13 Thread Gabriele Fatigati
e OMPI > plugins got slurped up into their respective libraries (e.g., libmpi.a). > > If you run ompi_info --param btl tcp, do you see anything at all? If not, > that would indicate that the TCP BTL wasn't built. IF so, can you send your > build logs/etc.? (please compress!) &

Re: [OMPI users] btl_tcp_if_exclude param

2010-04-13 Thread Gabriele Fatigati
s/openmpi/1.3.3/intel--11.1--binary/etc/openmpi-mca-params.conf]) My actual configuration is: btl = ^tcp btl_tcp_if_exclude = eth0,ib0,ib1 oob_tcp_include = eth1,lo But is it right? I have some doubt.. 2010/4/13 Jeff Squyres > On Apr 13, 2010, at 9:03 AM, Gabriele Fatigati wrote: > > &

Re: [OMPI users] btl_tcp_if_exclude param

2010-04-13 Thread Gabriele Fatigati
Ok Jeff, i have understood. Thanks very much for your help! Regards. 2010/4/13 Jeff Squyres > On Apr 13, 2010, at 9:17 AM, Gabriele Fatigati wrote: > > > My actual configuration is: > > > > btl = ^tcp > > btl_tcp_if_exclude = eth0,ib0,ib1 > > oob_tcp_inclu

Re: [OMPI users] Questions about MPI_Isend

2010-05-11 Thread Gabriele Fatigati
' > waiting. Is there a way to do this? > > Regards, > Gijsbert > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > -- Ing. Gabriele Fatigati Parallel programmer CINECA Sy

Re: [OMPI users] Questions about MPI_Isend

2010-05-11 Thread Gabriele Fatigati
y. 2010/5/11 Gijsbert Wiesenekker > > On May 11, 2010, at 9:29 , Gabriele Fatigati wrote: > > Dear Gijsbert, > > > >Ideally I would like to check how many MPI_Isend messages have not been > processed yet, so that I can stop >sending messages if there are 't

[OMPI users] Dynamic algorithms problem

2010-07-04 Thread Gabriele Fatigati
03ib0 exited on signal 11 (Segmentation fault). -- The same using other Bcast algorithm. Disabling dynamic rules, it works well. Maybe i'm using some wrong parameter setup? Thanks in advance. -- Ing. Gabriele Fatigati

[OMPI users] UDAPL 2.0 support

2010-07-05 Thread Gabriele Fatigati
;" ofa-v2-ipath0-2 u2.0 nonthreadsafe default libdaploscm.so.2 dapl.2.0 "ipath0 2" "" ofa-v2-ehca0-1 u2.0 nonthreadsafe default libdaploscm.so.2 dapl.2.0 "ehca0 1" "" ofa-v2-iwarp u2.0 nonthreadsafe default libdaplofa.so.2 dapl.2.0 "eth2 0" "" it works only if i use 1.2 interface, not with 2.0 version. Thanks in advance. -- Ing. Gabriele Fatigati Parallel programmer CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy www.cineca.itTel: +39 051 6171722 g.fatigati [AT] cineca.it

Re: [OMPI users] Dynamic algorithms problem

2010-07-07 Thread Gabriele Fatigati
ynamic_decision = 1; \ > EXECUTE; \ > > > > > > On Jul 4, 2010, at 8:12 AM, Gabriele Fatigati wrote: > > > Dear OpenMPI user, > > > > i'm trying to use collective dynamic rules with OpenM

[OMPI users] OpenMPI flags conditions

2010-07-15 Thread Gabriele Fatigati
dvance. -- Ing. Gabriele Fatigati Parallel programmer CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy www.cineca.itTel: +39 051 6171722 g.fatigati [AT] cineca.it

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