Re: [OMPI users] Two different compilation of openmpi

2007-09-13 Thread Andrew J Caird
Francesco, We use modules (http://modules.sourceforge.net/) to manage 14 different OpenMPI versions on the same cluster, along with their associated applications. This is a nice way to establish dependancies between apps and libs and keep things organized. Good luck. --andy $ module avail

[OMPI users] seg faults with IB and RH ibverbs-1.1.1-9

2008-08-25 Thread Andrew J Caird
Hello all, We recently applied the latest RedHat update (/etc/redhat-release says "Red Hat Enterprise Linux WS release 4 (Nahant Update 7)") to our cluster, and now codes that use IB seg fault. We have tried multiple versions of OpenMPI and PGI and GNU compilers. We have compiled with --memory-

Re: [OMPI users] seg faults with IB and RH ibverbs-1.1.1-9

2008-08-27 Thread Andrew J Caird
As I mentioned it might be, it was a local issue. The lesson is that one should be very careful about OFED versions and cleanliness. :) --andy On Mon, 25 Aug 2008, Andrew J Caird wrote: Hello all, We recently applied the latest RedHat update (/etc/redhat-release says "Red Hat Enter

Re: [OMPI users] PGI 8.0-4 doesn't like ompi/mca/op/op.h

2009-03-13 Thread Andrew J Caird
FWIW, It compiles with PGI 7.2 on RHEL4U7 [acaird@nyx-login1 ~]$ ompi_info | grep "compiler abs" C compiler absolute: /usr/caen/pgi-7.2/linux86-64/7.2-1/bin/pgcc C++ compiler absolute: /usr/caen/pgi-7.2/linux86-64/7.2-1/bin/pgCC Fortran77 compiler abs: /usr/caen/pgi-7.2/linux86-64/7.2

Re: [OMPI users] OpenMPI, debugging, and Portland Group's pgdbg

2006-07-05 Thread Andrew J Caird
This took a long time for me to get to, but once I did, what I found was that the closest thing to working for the PGI compilers with OpenMPI is this command: mpirun --debugger "pgdbg @mpirun@ @mpirun_args@" --debug -np 2 ./cpi It appears to work, that is, you can select a process with the

[OMPI users] C++ error: static object marked for destruction more than once

2006-08-16 Thread Andrew J Caird
Hello, I have a short code segment that, when compiled with mpiCC fails at run-time with the error: C++ runtime abort: internal error: static object marked for destruction more than once If I compile the same code with mpicc, it works fine. If I compile the same code with LAM's mpiCC it

Re: [OMPI users] Can OpenMPI be used with R?

2006-12-11 Thread Andrew J Caird
Hello, I looked into this a few months back, although we have had OK luck using LAM with R/MPI. I emailed the author of R/MPI, Dr. Hao Yu and his answer was: Date: Mon, 25 Sep 2006 21:57:40 -0500 From: Hao Yu To: "Caird, Andrew J" Subject: Re: Rmpi and OpenMPI? Hi Andy, Sorry for my sl

Re: [OMPI users] Infiniband - Any suggestions on "How can you proveto me that OpenMPI is using it?"

2006-12-20 Thread Andrew J Caird
You can also usually watch the counters on the IB cards and Ethernet cards. For programs that have a lot of communication between nodes it is quickly obvious which network you're using. The IB card monitoring is driver specific, but you should have some tools for this. For Ethernet you can