Re: [OMPI users] Java-OpenMPI returns with SIGSEGV

2016-07-06 Thread Gundram Leifert
Hello Jason, thanks for your response! I thing it is another problem. I try to send 100MB bytes. So there are not many tries (between 10 and 30). I realized that the execution of this code can result 3 different errors: 1. most often the posted error message occures. 2. in <10% the cases i h

Re: [OMPI users] Java-OpenMPI returns with SIGSEGV

2016-07-06 Thread Gilles Gouaillardet
Note a race condition in MPI_Init has been fixed yesterday in the master. can you please update your OpenMPI and try again ? hopefully the hang will disappear. Can you reproduce the crash with a simpler (and ideally deterministic) version of your program. the crash occurs in hashcode, and this ma

Re: [OMPI users] Java-OpenMPI returns with SIGSEGV

2016-07-06 Thread Gundram Leifert
Hello Giles, thank you for your hints! I did 3 changes, unfortunately the same error occures: update ompi: commit ae8444682f0a7aa158caea08800542ce9874455e Author: Ralph Castain List-Post: users@lists.open-mpi.org Date: Tue Jul 5 20:07:16 2016 -0700 update java: java version "1.8.0_92" Java

Re: [OMPI users] Java-OpenMPI returns with SIGSEGV

2016-07-06 Thread Gilles Gouaillardet
I will have a look at it today how did you configure OpenMPI ? Cheers, Gilles On Thursday, July 7, 2016, Gundram Leifert wrote: > Hello Giles, > > thank you for your hints! I did 3 changes, unfortunately the same error > occures: > > update ompi: > commit ae8444682f0a7aa158caea08800542ce98744

Re: [OMPI users] Java-OpenMPI returns with SIGSEGV

2016-07-06 Thread Gilles Gouaillardet
Gundram, fwiw, i cannot reproduce the issue on my box - centos 7 - java version "1.8.0_71" Java(TM) SE Runtime Environment (build 1.8.0_71-b15) Java HotSpot(TM) 64-Bit Server VM (build 25.71-b15, mixed mode) i noticed on non zero rank saveMem is allocated at each iteration. ideally, the