Hi,
I'm using openmpi-1.6.4 to distribute a jobs in 2 different nodes using
this command:
*"mpirun --hostfile myhostfile -np 10 nwchem my_code.nw"*
Here, "myhostfile" contains:
*cx0937 slots=5*
*cx0934 slots=5*
But as I have to submit the jobs using .pbs script, I'm wondering in this
case,
Abhisek,
Generally, if you built openmpi with PBS support, it will automatically using
the appropriate nodes with ‘mpirun ’
If not, you can use the environment variables provided to your session:
mpirun --hostfile $PBS_NODEFILE -np $(cat $PBS_NODEFILE|wc -l)
Brian Andrus
ITACS/Research Comput
Hi Abhisek
On 08/03/2015 12:59 PM, abhisek Mondal wrote:
Hi,
I'm using openmpi-1.6.4 to distribute a jobs in 2 different nodes
using this command:
/"mpirun --hostfile myhostfile -np 10 nwchem my_code.nw"/
Here, "myhostfile" contains:
/cx0937 slots=5 /
/cx0934 slots=5/
I am assuming by pbs
We've been struggling with this error for a while, so hoping someone more
knowledgeable can help!
Our java MPI code exits with a segfault during its normal operation, *but
the segfault occurs before our code ever uses MPI functionality like
sending/receiving. *We've removed all message calls and a
Nate,
a similar issue has already been reported at
https://github.com/open-mpi/ompi/issues/369, but we have
not yet been able to figure out what is going wrong.
right after MPI_Init(), can you add
Thread.sleep(5000);
and see if it helps ?
Cheers,
Gilles
On 8/4/2015 8:36 AM, Nate Chambers wr
Gilles,
Yes I saw that github thread, but wasn't certain this was the same issue.
Very possible that it is. Oddly enough, that github code doesn't crash for
us.
Adding a sleep call doesn't help. It's actually now crashing on the
MPI.init(args) call itself, and the JVM is reporting the error. Earli
