Re: [OMPI users] Questions regarding MPI intercommunicators & collectives

2015-02-24 Thread George Bosilca
> On Feb 23, 2015, at 10:20 , Harald Servat wrote: > > Hello list, > > we have several questions regarding calls to collectives using > intercommunicators. In man for MPI_Bcast, there is a notice for the > inter-communicator case that reads the text below our questions. > > If an I is an i

[OMPI users] Why are the static libs different if compiled with or without dynamic switch?

2015-02-24 Thread twurgl
I am setting up Openmpi 1.8.4. The first time I compiled, I had the following: version=1.8.4.I1404211913 ./configure \ --disable-vt \ --prefix=/apps/share/openmpi/$version \ --disable-shared \ --enable-static \ --with-verbs \ --enable-mpirun-prefix-by-default \ --with

[OMPI users] MPIIO and OrangeFS

2015-02-24 Thread vithanousek
Hello, Im not sure if I have my OrangeFS (2.8.8) and OpenMPI (1.8.4) set up corectly. One short questin? Is it needed to have OrangeFS mounted through kernel module, if I want use MPIIO? My simple MPIIO hello world program doesnt work, If i havent mounted OrangeFS. When I mount OrangeFS, it

[OMPI users] machinefile binding error

2015-02-24 Thread Galloway, Jack D
I recently upgraded my CentOS kernel and am running 2.6.32-504.8.1.el6.x86_64, in this upgrade I also decided to upgrade my intel/openmpi codes. I upgraded from: intel version 13.1.2, with openmpi 1.6.5 intel 15.0.2, with openmpi 1.8.4 Previously a command of "mpirun -np NP -machinefile MACH ex

Re: [OMPI users] Why are the static libs different if compiled with or without dynamic switch?

2015-02-24 Thread Jeff Squyres (jsquyres)
The --disable-dlopen option actually snips out some code from the Open MPI code base: it disables a feature (and the code that goes along with it). Hence, it makes sense that the resulting library would be a different size: there's actually less code compiled in it. > On Feb 24, 2015, at 2:45

Re: [OMPI users] machinefile binding error

2015-02-24 Thread Ralph Castain
Ah, now that’s a “feature” :-) Seriously, it *is* actually a new feature of the 1.8 series. We now go out and actually sense the number of cores on the system and set the number of slots to that value unless you tell us otherwise. It was something people continually nagged us about, and so we m

Re: [OMPI users] MPIIO and OrangeFS

2015-02-24 Thread Rob Latham
On 02/24/2015 02:00 PM, vithanousek wrote: Hello, Im not sure if I have my OrangeFS (2.8.8) and OpenMPI (1.8.4) set up corectly. One short questin? Is it needed to have OrangeFS mounted through kernel module, if I want use MPIIO? nope! My simple MPIIO hello world program doesnt work,

Re: [OMPI users] Why are the static libs different if compiled with or without dynamic switch?

2015-02-24 Thread Tom Wurgler
Did you mean --disable-shared instead of --disable-dlopen? And I am still confused. With "--disable-shared" I get a bigger static library than without it? thanks From: users on behalf of Jeff Squyres (jsquyres) Sent: Tuesday, February 24, 2015 3:5

Re: [OMPI users] machinefile binding error

2015-02-24 Thread Galloway, Jack D
Thank you sir, that fixed the first problem, hopefully the second is as easy! I still get the second error when trying to farm out on a “large” number of processors: machine file (“mach_burn_24s”): tebow tebow121 slots=24 tebow122 slots=24 tebow123 slots=24 tebow124 slots=24 tebow125 slots=24 te

Re: [OMPI users] Why are the static libs different if compiled with or without dynamic switch?

2015-02-24 Thread Jeff Squyres (jsquyres)
On Feb 24, 2015, at 4:09 PM, Tom Wurgler wrote: > > Did you mean --disable-shared instead of --disable-dlopen? Ah, sorry -- my eyes read one thing, and my brain read another. :-) > And I am still confused. With "--disable-shared" I get a bigger static > library than without it? I see that L

Re: [OMPI users] machinefile binding error

2015-02-24 Thread Galloway, Jack D
I think the error may be due to a new architecture change (brought on perhaps by the intel compilers?). Bad wording here, but I’m really stumbling. As I add processors to the mpirun hostname call, at ~100 processors I get the following error, which may be informative to more seasoned eyes. Ad

Re: [OMPI users] Help on getting CMA works

2015-02-24 Thread Nathan Hjelm
I don't know the reasoning for requiring --with-cma to enable CMA but I am looking at auto-detecting CMA instead of requiring Open MPI to be configured with --with-cma. This will likely go into the 1.9 release series and not 1.8. -Nathan On Thu, Feb 19, 2015 at 09:31:43PM -0500, Eric Chamberland

Re: [OMPI users] machinefile binding error

2015-02-24 Thread Ralph Castain
It looks to me like some of the nodes don’t have the required numactl packages installed. Why don’t you try launching the job without binding, just to see if everything works? Just add “—bind-to none” to your cmd line and see if things work > On Feb 24, 2015, at 2:21 PM, Galloway, Jack D wrot