[OMPI users] exceedingly virtual memory consumption of MPI environment if higher-setting "ulimit -s"

2009-11-19 Thread Paul Kapinos
Hi volks, we see an exeedingly *virtual* memory consumtion through MPI processes if "ulimit -s" (stack size)in profile configuration was setted higher. Furthermore we believe, every mpi process started, wastes about the double size of `ulimit -s` value which will be set in a fresh console (t

Re: [OMPI users] exceedingly virtual memory consumption of MPI environment if higher-setting "ulimit -s"

2009-11-19 Thread mtcreekmore
People can correct me if I am wrong, but are you NOT suppose to run applications directly and only suppose to submit them using the batch process "qsub" to prevent all this overuse of resources? > Date: Thu, 19 Nov 2009 19:21:46 +0100 > From: kapi...@rz.rwth-aachen.de > To: us..

[OMPI users] Programming help required in Interleaving computation+communication !

2009-11-19 Thread souvik bhattacherjee
Hi all, I'm trying to interleave computation with communication. As a result, I have resorted to using MPI with POSIX threads. Primarily, I am trying to communicate a partial vector v3 while computing an inner product v1*v2 (mod q). To give you an idea of the platform and the libraries: 1. Intel d

Re: [OMPI users] exceedingly virtual memory consumption of MPI, environment if higher-setting "ulimit -s"

2009-11-19 Thread Terry Dontje
A couple things to note. First Sun MPI 8.2.1 is effectively OMPI 1.3.4. I also reproduced the below issue using a C code so I think this is a general issue with OMPI and not Fortran based. I did a pmap of a process and there were two anon spaces equal to the stack space set by ulimit. In o

Re: [OMPI users] exceedingly virtual memory consumption of MPI, environment if higher-setting "ulimit -s"

2009-11-19 Thread David Singleton
Depending on the setup, threads often get allocated a thread local stack with size equal to the stacksize rlimit. Two threads maybe? David Terry Dontje wrote: A couple things to note. First Sun MPI 8.2.1 is effectively OMPI 1.3.4. I also reproduced the below issue using a C code so I think

[OMPI users] Program hangs

2009-11-19 Thread Jiaye Li
Hello I installed openmpi-1.3.3 on my single node(cpu) intel 64bit quad-core machine. The compiler info is: ** intel-icc101018-10.1.018-1.i386 libgcc-4.4.0-4.i586 gcc-4.4.0-4.i586 gcc-gfor