Re: [OMPI users] openmpi 1.3.1: bind() failed: Permission denied (13)

2009-04-03 Thread Jerome BENOIT
Hello List, Dirk Eddelbuettel wrote: On 3 April 2009 at 06:35, Jerome BENOIT wrote: | It appeared that the file /etc/openmpi/openmpi-mca-params.conf on node green was the only one | into the cluster to contain the line | | btl_tcp_port_min_v4 = 49152 Great -- so can we now put your claims of

Re: [OMPI users] [Fwd: Re: Configure OpenMPI and SLURMon Debian (Lenny)]

2009-04-03 Thread Jerome BENOIT
Hello List ! George Bosilca wrote: The range of ports for the OOB TCP has been removed by commit r20390. Apparently it was replaced by the static port functionality. Only the TCP BTL use the range mechanism. if applicable, what is the parameter name for the this static port ? Thanks in adv

Re: [OMPI users] Issues on install 1.3.1

2009-04-03 Thread Francesco Pietra
As far as I understand, apt-get install libnuma1 libnuma-dbg libnuma-dev installs libnuma libraries 64 bit in /usr/lib there also two symlinks /usr/lib32 and /usr/lib64 but there is no trace of the libnuma libraries there. That the computational codes I use run twice as fast at 64 bit than 32 bi

Re: [OMPI users] Issues on install 1.3.1

2009-04-03 Thread Francesco Pietra
Sorry for such pedestrian misprint. Corrected, the configure ended with error: "Expected file /usr/lib/include/numa.h" In debian amd64 lenny it has a different location: "/usr/include/numa.h" Can the configure script be modified safely to account for the different location? thanks francesco

Re: [OMPI users] openmpi 1.3.1: bind() failed: Permission denied (13)

2009-04-03 Thread Jeff Squyres
On Apr 3, 2009, at 3:36 AM, Jerome BENOIT wrote: > This seems to be a local admin issue as such a line is unlikely to have been > added by either the Debian Open MPI or slurm packages. This is clearly an admin issue: maintaining a cluster of clones is quite a challenge :-) It certain

Re: [OMPI users] [Fwd: Re: Configure OpenMPIand SLURMon Debian (Lenny)]

2009-04-03 Thread Jeff Squyres
What George is saying is that OMPI has two different systems that use sockets: the BTL (MPI communications) and the OOB (OMPI's internal management communications). We've been talking about the TCP BTL parameters over the rest of this thread. For the TCP OOB, it looks like the parameter n

[OMPI users] Problems Compiling OpenMPI with Sun Studio 12 compilers on RHEL 5

2009-04-03 Thread Segovia, Andrea
> Hello, > > I am trying to compile OpenMPI on a Red Hat Enterprise Linux 5 platform with > the Sun Studio 12 compiler suite. (I currently have the Red Hat-bundled > OpenMPI w/GNU compilers running). > > I have already encountered and addressed the problem of the C++ compiler not > working in

Re: [OMPI users] [Fwd: Re: Configure OpenMPIand SLURMon Debian (Lenny)]

2009-04-03 Thread Jerome BENOIT
Thanks for the reply ! I asked because ompi_info --param all all | grep static gave nothing. This feature is certainly for the coming version. Jeff Squyres wrote: What George is saying is that OMPI has two different systems that use sockets: the BTL (MPI communications) and the OOB (OMPI's

Re: [OMPI users] Problems Compiling OpenMPI with Sun Studio 12 compilers on RHEL 5

2009-04-03 Thread Brian W. Barrett
Hi - Unfortunately, as the bug at Sun's web site points out, their compiler is borked. There's not a lot we can do about that fact, without causing a whole host of other problems. If you aren't using C++, I'd recommend compiling Open MPI with GCC and then reseting the wrapper compilers to i

Re: [OMPI users] [Fwd: Re: ConfigureOpenMPIand SLURMon Debian (Lenny)]

2009-04-03 Thread Jeff Squyres
Gahh -- you're right. I accidentally checked our development trunk, not the released v1.3 series... Sorry for the confusion. George, too, was referring to something that happened on our development trunk, not the v1.3 series. On Apr 3, 2009, at 10:16 AM, Jerome BENOIT wrote: Thanks for

Re: [OMPI users] Problems Compiling OpenMPI with Sun Studio 12

2009-04-03 Thread Terry Dontje
Which version of the Sun Studio compilers are you using also which version of OMPI are you trying to build. I am successful with building OMPI with the Sun Studio Express release 200811 on Linux systems if I don't use the C++ compiler. Prior releases we did suffer from some issues. A "cc -V"

[OMPI users] libnuma issue

2009-04-03 Thread Francesco Pietra
I am posting again more specifically because it may have been buried in a more generic thread. With debian linux amd64 lenny and openmpi-1.3.1 ./configure cc=/opt/intel/cce/10.1.015/bin/icc cxx=/opt/intel/cce/10.1.015/bin/icpc F77=/opt/intel/fce/10.1.015/bin/ifort FC=/opt/intel/fce/10.1.015/bin/i

Re: [OMPI users] libnuma issue

2009-04-03 Thread John Hearns
2009/4/3 Francesco Pietra : > > "expected file /usr/lib/include/numa.h was not found" > > In debian amd64 lenny numa.h has a different location > "/usr/include/numa.h". Attached is the config.log. > > I would appreciate help in circumventing the problem. It is /usr/include/numa.h on SuSE also (SLE

Re: [OMPI users] libnuma issue

2009-04-03 Thread Francesco Pietra
I was not sure whether that is a technically correct procedure. It works. Thanks francesco On Fri, Apr 3, 2009 at 6:05 PM, John Hearns wrote: > 2009/4/3 Francesco Pietra : >> > "expected file /usr/lib/include/numa.h was not found" >> >> In debian amd64 lenny numa.h has a different location >> "/u

Re: [OMPI users] libnuma issue

2009-04-03 Thread John Hearns
2009/4/3 Francesco Pietra : > I was not sure whether that is a technically correct procedure. It works. > Thanks > It most certainly is not. But I have been a Unix system admin for many years. I have done things which I am not proud of If I ever offer to let you use my keyboard, wash your

Re: [OMPI users] libnuma issue

2009-04-03 Thread Francesco Pietra
"I was not sure" before your mail. I was sure after that. I'm a chemist with little knowledge of systems. I used in the past to make symlinks to outdated or upgraded libraries. It worked, but I was aware of the risk. This case has no risk. I was in a mess, now partly out. The code I'm interested i