Re: [OMPI users] MPI jobs ending up in one node

2009-03-14 Thread Peter Teoh
oopssorryit is in Intel MPI library. Thanks!!! On Fri, Mar 13, 2009 at 9:47 PM, Ralph Castain wrote: > Hmmm...your comments don't sound like anything relating to Open MPI. Are you > sure you are not using some other MPI? > > Our mpiexec isn't a script, for example, nor do we have anythi

Re: [OMPI users] Compiling ompi for use on another machine

2009-03-14 Thread Raymond Wan
Hi Ben, ben rodriguez wrote: I have compiled ompi and another program for use on another rhel5/x86_64 machine, after transfering the binaries and setting up environment variables is there anything else I need to do for ompi to run properly? When executing my prog I get:

Re: [OMPI users] PGI 8.0-4 doesn't like ompi/mca/op/op.h

2009-03-14 Thread Terry Dontje
You know this all looks very similar to the reason why rolfv putback r20351 which essentially defined out restrict within opal_config_bottom.h when using Sun Studio. --td List-Post: users@lists.open-mpi.org Date: Fri, 13 Mar 2009 16:40:49 -0400 From: Jeff Squyres Subject: Re: [OMPI users] PGI

Re: [OMPI users] PGI 8.0-4 doesn't like ompi/mca/op/op.h

2009-03-14 Thread Jeff Squyres
Yes, it does. It re-looking at this problem, it seemed to me: 1. The real fix is to talk to the AC people and get something like AC_CXX_RESTRICT. The PGI compiler is one place where "restrict" support may be different in the C and C++ compilers. I'm not sure what the Right answer is ther

Re: [OMPI users] PGI 8.0-4 doesn't like ompi/mca/op/op.h

2009-03-14 Thread Jeff Squyres
Oops! I sent the patch to George but didn't send it to everyone else. Here's a patch showing how I propose to fix this problem: Index: ompi/mca/op/op.h === --- ompi/mca/op/op.h(revision 20777) +++ ompi/mca/op/op.h(working

Re: [OMPI users] Problem in MPI::Finalize when freeingintercommunicators

2009-03-14 Thread Jeff Squyres
On Mar 13, 2009, at 5:15 PM, Mikael Djurfeldt wrote: On Fri, Mar 13, 2009 at 9:28 PM, Jeff Squyres wrote: > No you should not need to do this. > > Is there any chance you could upgrade to Open MPI v1.3? Yes. It works without a Barrier under v1.3. Is this a known problem? Possibly...? I

Re: [OMPI users] freeing attributes on communicators

2009-03-14 Thread Jeff Squyres
On Mar 12, 2009, at 12:43 PM, Robert Latham wrote: I'm using openmpi-1.3 in this example, linux, gcc-4.3.2, configured with nothing special. If I run the following simple C code under valgrind, single process, I get some errors about reading and writing already-freed memory: Hmm. This is an

Re: [OMPI users] Can't start program across network

2009-03-14 Thread Jeff Squyres
Can you send all the information here: http://www.open-mpi.org/community/help/ (including the network information) Thanks! On Mar 13, 2009, at 9:12 PM, Raymond Wan wrote: Hi Jeff, Jeff Squyres wrote: > On Mar 13, 2009, at 6:17 AM, Raymond Wan wrote: > >> What doesn't work is: >> >> [

Re: [OMPI users] Run-time problem

2009-03-14 Thread Jeff Squyres
Sorry for the delay in replying; this week unexpectedly turned exceptionally hectic for several us... On Mar 9, 2009, at 2:53 PM, justin oppenheim wrote: Yes. As I indicated earlier, I did use these options to compile my program MPI_CXX=/programs/openmpi/bin/mpicxx MPI_CC=/programs/openmpi

Re: [OMPI users] tests for heterogenous installations?

2009-03-14 Thread Jeff Squyres
Sorry for the late reply. Basically, any MPI application will do. If you can run it in a heterogeneous scenario, then it works. I don't think we have many/any specific tests for heterogeneous scenarios that are different than our "normal" (homogeneous) tests. On Mar 5, 2009, at 11:30 A

Re: [OMPI users] valgrind complaint in openmpi1.3 (mca_mpool_sm_alloc)

2009-03-14 Thread Jeff Squyres
George -- Any particular reason you fixed it this way? On Mar 10, 2009, at 1:40 PM, Åke Sandgren wrote: On Tue, 2009-03-10 at 09:23 -0800, Eugene Loh wrote: > Åke Sandgren wrote: > > >Hi! > > > >Valgrind seems to think that there is an use of uninitialized value in > >mca_mpool_sm_alloc, i

Re: [OMPI users] Compiling ompi for use on another machine

2009-03-14 Thread ben rodriguez
Both machines are x86_64, although one is a single quad core and the other is a dual quad core, the RH installs are the same. ompi and the other program were both statically linked. After the compiles I copied the target dirs to the new machine and hoped they would run, the program I wish to ru

[OMPI users] core dump while running openmpi

2009-03-14 Thread Ted Yu
Hi there: I'm trying to install an old version of openmpi 1.1.1 on a 32 bit cluster and running a program with it.  This program runs fine for another 64 bit cluster which has openmpi 1.1.1 installed, but when running this on the 32 bit cluster, I get the following error: /var/spool/pbs/mom_pri

Re: [OMPI users] freeing attributes on communicators

2009-03-14 Thread George Bosilca
Based on my understanding of the MPI standard, the attribute copy and delete functions have to be called every time we duplicate or free a communicator (if the attribute is attached to it). As in this particular case, the copy function is empty (redirected to MPI_NULL_COPY_FN) it should be

Re: [OMPI users] valgrind complaint in openmpi1.3 (mca_mpool_sm_alloc)

2009-03-14 Thread George Bosilca
I set it based on the only available information we have in the init function. This way the variable is always initialized, and the upper layer (whatever it is) has the responsibility to set it to something useful. Looking at the code it seems that the upper layer in question is the mpool

Re: [OMPI users] core dump while running openmpi

2009-03-14 Thread Terry Frankcombe
Looks like I'm the first to say it: 1.1.1 is very, very old. Are you saying that you want to install with 1.1.1 because your code is known to work with it, or that it's known not to work with later versions (1.3 is released)? Either way, a later OMPI version is what you want. If your app doesn't