[OMPI users] Need help in setting up openmpi on multiple clusters

2009-01-08 Thread gaurav gupta
Hi, I am new to mpi programming and openmpi. I have installed openmpi and run several sample programmes on single machine. But while running on several nodes it is showing errors. I have configured openmpi and automated login to all nodes with user mpi. Now on master i tried to run by "mpiexec -n

Re: [OMPI users] Need help in setting up openmpi on multiple clusters

2009-01-08 Thread jody
Hi Gupta One way to do it is to run your application in a directory to which all nodes have access via NFS. And if "./" is not in your $PATH you may want to write ./a.out instead of just a.out. Jody On Thu, Jan 8, 2009 at 8:02 AM, gaurav gupta <1989.gau...@googlemail.com> wrote: > Hi, > > I a

Re: [OMPI users] Error message when using MPI_Type_struct()

2009-01-08 Thread Thomas Ropars
Hi, I submit again this old question because I didn't get any answer last time. My problem is the following one: I try to implement piggyback mechanisms. In fact I want to piggyback an integer on every message. To do that, I dynamically create new datatype for each send. The code I use to do t

[OMPI users] Job problem

2009-01-08 Thread Gabriele Fatigati
Dear OpenMPI Developers, i'm running my jobs under OpenMPI 1.2.5 Intel compiled. Our cluster has Infiniband net and LSF scheduler. Since yesterday, I have a strange problem over some nodes: [node0862:29190] [0,0,0] ORTE_ERROR_LOG: Out of resource in file > base/rmaps_base_support_fns.c at line 225

Re: [OMPI users] Job problem

2009-01-08 Thread Gabriele Fatigati
More precisely: /cineca/sysprod/lsf/7.0/linux2.6-glibc2.3-x86_64/bin/TaskStarter The requested hosts were: node0911 Verify that you have mapped the allocated resources properly using the --host specification. -- [node

Re: [OMPI users] Job problem

2009-01-08 Thread Ralph Castain
Hi Gabriele What the message is saying is that you specified a host that isn't in your allocation. I'm not sure how you are telling mpirun what hosts are allocated for your use, or which ones you want it to use. Could you include your command line and/or any hostfile you might be using? W

[OMPI users] RCE Interview of OpenMPI

2009-01-08 Thread Brock Palen
Hi List, I am starting up a PodCast on my own time on HPC/Research Computing. One of the requested topics was OpenMPI. Website is: www.rce-cast.com Please send me on the site any topics or software you would like to hear. Also you can see a listing of current nominations. Jeff I know y