[OMPI users] wrong results from MPI_Scatter with strided vector

2008-06-16 Thread Siegmar Gross
Hi, I have a problem with derived data types and MPI_Scatter/MPI_Gather in C (Solaris 10 sparc, openmpi-1.2.4). I want to distribute the columns of a matrix with MPI_Scatter/MPI_Gather. Unfortunately my program didn't work with my derived data type, so I used a 2x2 matrix to figure out what's wro

Re: [OMPI users] wrong results from MPI_Scatter with strided vector

2008-06-16 Thread George Bosilca
The derived datatype used together with the scatter operation is wrong. Your datatype looks correct, except when you use it with a count. A MPI datatype is defined by its size and content, as well as its extent. When multiple elements of the same size are used in a contiguous manner (such i

[OMPI users] Application Context and OpenMPI 1.2.4

2008-06-16 Thread pat . o'bryant
I am having a problem using an "application context" with OpenMPI 1.2.4. My invocation of "mpirun" is shown below along with the "--app" file. Invocation: export LD_LIBRARY_PATH="/usr/local/openmpi-1.2.4/gnu/lib" /usr/local/openmpi-1.2.4/gnu/bin/mpirun --app /my_id/appschema Contents

[OMPI users] gfortran bindings apparently not built on mac os leopard

2008-06-16 Thread Weirs, V Gregory
I am having trouble building mpif77/mpif90 with gfortran on Mac OS 10.5. Or maybe just running. The configure, make all, and make install seemed to go just fine, finding my gfortran and apparently using it, but the scripts mpif77 and mpif90 give the error that my openmpi was not built with for

Re: [OMPI users] gfortran bindings apparently not built on mac os leopard

2008-06-16 Thread David Gunter
I believe you still must add "--enable-f77" and "--enable-f90" to the OMPI configure line in addition to setting the FC and F77 env variables. -david -- David Gunter HPC-3: Parallel Tools Team Los Alamos National Laboratory On Jun 16, 2008, at 10:25 AM, Weirs, V Gregory wrote: I am having

Re: [OMPI users] gfortran bindings apparently not built on mac os leopard

2008-06-16 Thread Doug Reeder
Greg, If you use the absolute path names to run your mpif77 and mpif90 what output do you get. In spite of the results from which mpif77, the outputs from mpif77 and mpif90 look suspiciously like the outputs from the apple supplied versions in /usr/bin. Doug Reeder On Jun 16, 2008, at 9:2

Re: [OMPI users] gfortran bindings apparently not built on mac os leopard

2008-06-16 Thread Doug Reeder
Greg, In your run_output file you don't appear to be using the openmpi versions that you built. From your make-install.out file it looks like your versions are in /usr/local/openmpi/1.2.6-gcc4.0/bin. You need to use that absolute path or prepend that path to your PATH environment variable

[OMPI users] help me please, about Open MPI

2008-06-16 Thread Tony Smith
Dear Sir: I am trying to install Open MPI on a cluster that has been installed with mpich- gm MPI. I have followed the steps on your website. I can compile and run the Hello_c application correctly. But, how can I make sure that the application is run by Open MPI not by mpich-

Re: [OMPI users] help me please, about Open MPI

2008-06-16 Thread Andreas Schäfer
Dear Mister Smith, Thank you for installing Open MPI. On 12:51 Mon 16 Jun , Tony Smith wrote: > I have changed PATH and LD_LIBRARY_PATH: Please be aware that you have to make those changes within your job script. Otherwise they will only affect your local shell. > But, how can I make sure t

Re: [OMPI users] help me please, about Open MPI

2008-06-16 Thread Tony Smith
Dear Sir: thanks. I have changed it to its absolute path: /ptmp/myname/openmpi123/ompi123_install/bin/mpirun -np 8 /ptmp/myname/openmpi123/openmpi-1.2.3/examples/hello_c But I still got the error : [hpc-cluster-38 :32635] [0,0,0] ORTE_ERR

Re: [OMPI users] gfortran bindings apparently not built on mac os leopard

2008-06-16 Thread Weirs, V Gregory
added You should not need to delete, just add in front of MPICH. > Would you please help me with that ? I utterly hope I just did. Most sincerely yours ;-) -Andreas -- Andreas Sch?fer Cluster and Metacomputing Working Group Friedrich-Schiller-

Re: [OMPI users] locked memory problem

2008-06-16 Thread Jeff Squyres
Can you check to see what the locked memory limits are *inside of a job*? This can be different than what they are if you login to the node independently / outside of an LSF job. For example, write a quickie script that runs "ulimit -a" and submit that through LSF and see what results you

[OMPI users] OpenMPI and C++

2008-06-16 Thread Davi Vercillo C. Garcia
Hi, Can I use OpenMPI with C++ without any POGs ? Are there some kind of wrapper of OpenMPI to C++ ? -- Davi Vercillo Carneiro Garcia Universidade Federal do Rio de Janeiro Departamento de Ciência da Computação DCC-IM/UFRJ - http://www.dcc.ufrj.br "Good things come to those who... wait." - Deb

Re: [OMPI users] OpenMPI and C++

2008-06-16 Thread Brock Palen
OpenMPI codes with C++ MPI methods if you want. Most people I know use the C bindings in their C++ anyway. Nothing special needs to be done to call C from C++ if it is written for this (OpenMPI is) Not sure what a POG is so I may be wrong on that point. Brock Palen www.umich.edu/~brockp Cen

[OMPI users] Roadrunner blasts past the petaflop mark with Open MPI

2008-06-16 Thread Brad Benton
Greetings Open MPI users; we thought you'd be interested in the following announcement... A new supercomputer, powered by Open MPI, has broken the petaflop barrier to become the world's fastest supercomputer. The "Roadrunner" system was jointly developed by Los Alamos National Laboratories and IB

Re: [OMPI users] Roadrunner blasts past the petaflop mark with Open MPI

2008-06-16 Thread Brock Palen
Brad just curious. Did you tweak any other values for starting and running a job on such a large system? You say unmodified, but OpenMPI lets you tweak many values at runtime. I would be curious to expand what I know from what you discovered. Brock Palen www.umich.edu/~brockp Center for