Re: [OMPI users] OpenMPI 1.2.5 race condition / core dump with MPI_Reduce and MPI_Gather

2008-02-29 Thread John Markus Bjørndalen
George Bosilca wrote: [.] I don't think the root crashed. I guess that one of the other nodes crashed, the root got a bad socket (which is what the first error message seems to indicate), and get terminated. As the output is not synchronized between the nodes, one cannot rely on its ord

Re: [OMPI users] OpenMPI 1.2.5 race condition / core dump with MPI_Reduce and MPI_Gather

2008-02-29 Thread Gleb Natapov
On Thu, Feb 28, 2008 at 04:53:11PM -0500, George Bosilca wrote: > In this particular case, I don't think the solution is that obvious. If > you look at the stack in the original email, you will notice how we get > into this. The problem here, is that the FREE_LIST_WAIT is used to get a > fragmen

Re: [OMPI users] processes aborting on MPI_Finalize

2008-02-29 Thread Jeff Squyres
Sorry for the delay in replying. It's hard to say where the error is. I *hope* it's not in the release version of OMPI. :) Have you run through a memory checking debugger such as valgrind? Seeing errors in free() like this are *usually* some kind of heap violation (e.g., a bad or multi

Re: [OMPI users] Error compiling open-mpi

2008-02-29 Thread Jeff Squyres
Can you confirm that your C++ compiler is installed properly such that it is able to create shared libraries that use the STL and the std namespace? On Feb 27, 2008, at 3:32 PM, Albert Babinskas wrote: Hi i am running Red hat linux in school I am trying to compile open mpi and it gives me

[OMPI users] OpenMpi and Leopard

2008-02-29 Thread Frank Tabakin
I just upgraded to OSX 10.5.2 on my imacand am trying to install openmpi  for use with absoft fortran 90based on their instruction page:http://www.absoft.com/Products/Compilers/Fortran/Linux/fortran95/BuildingOpenMPI_MacIntel_v101.pdfI got into trouble as per info below.Seems to be a gcc problem.an

Re: [OMPI users] OpenMpi and Leopard

2008-02-29 Thread Jeff Squyres
FWIW, this doesn't look like an Absoft error -- it looks like gcc cannot create executables. So Open MPI (or any C application) cannot be built. Did you install the OS X developer tools? IIRC, that's where gcc is located, and is not part of the default OS X install. On Feb 29, 2008, a

Re: [OMPI users] build trouble

2008-02-29 Thread Jeff Squyres
Anze -- Sorry for the delay in replying; I've been on travel for 2 weeks. I tried a few different ways, but I simply cannot reproduce your error. It looks like you're running something like: ./configure --enable-static ... And therefore OMPI is building both static and shared libraries, wh

Re: [OMPI users] OpenMpi and Leopard

2008-02-29 Thread Frank Tabakin
That's probably the problem. I will try to install it. Thanks so much for the rapid reply. Frank On Feb 29, 2008, at 4:41 PM, Jeff Squyres wrote: FWIW, this doesn't look like an Absoft error -- it looks like gcc cannot create executables. So Open MPI (or any C application) cannot be built. Di

Re: [OMPI users] OpenMpi and Leopard

2008-02-29 Thread Frank Tabakin
You were right. Thanks Frank On Feb 29, 2008, at 4:41 PM, Jeff Squyres wrote: FWIW, this doesn't look like an Absoft error -- it looks like gcc cannot create executables. So Open MPI (or any C application) cannot be built. Did you install the OS X developer tools? IIRC, that's where gcc is l

[OMPI users] Loopback Communication

2008-02-29 Thread Elvedin Trnjanin
I'm using a "ping pong" program to approximate bandwidth and latency of various messages sizes and I notice when doing various transfers (eg. async) that the maximum bandwidth isn't the system's maximum bandwidth. I've looked through the FAQ and I haven't noticed this being covered but how does

Re: [OMPI users] Error compiling open-mpi

2008-02-29 Thread Albert Babinskas
figured it out, reinstalled fresh OS on different computer, and was able to compile. Thanx for help thought. And yes i was able to compile c++ programs, that used std namespaces. - Original Message - From: "Jeff Squyres" To: "Open MPI Users" Sent: Friday, February 29, 2008 3:29:14 PM (G